BLASTP 2.0MP-WashU [04-Sep-2000]
Reference: Gish, W. (1996-2000) http://blast.wustl.edu
Query= gi|125730|sp|P23475|KU70_MOUSE ATP-DEPENDENT DNA HELICASE II, 70 KD
SUBUNIT HOMOLOG (LUPUS KU AUTOANTIGEN PROTEIN P70) (70 KD SUBUNIT OF KU
ANTIGEN) (THYROID-LUPUS AUTOANTIGEN) (TLAA) (CTC BOX BINDING FACTOR 75 KD
SUBUNIT) (CTCBF) (CTC75).>gi|198637 (M38700) p70 Ku lupus autoantigen [Mus
musculus]
(595 letters)
Database: SWISS-PROT Release 35.0
69,113 sequences; 25,083,768 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
sp|P23475|KU70_MOUSE ATP-DEPENDENT DNA HELICASE II, 70 KD... 2934 0.0 1
sp|P12956|KU70_HUMAN ATP-DEPENDENT DNA HELICASE II, 70 KD... 2473 0.0 1
sp|P32807|HDF1_YEAST HIGH AFFINITY DNA-BINDING FACTOR SUB... 59 2.8e-05 6
sp|Q03673|YMO3_YEAST HYPOTHETICAL 22.7 KD PROTEIN IN CDC5... 78 0.040 2
sp|P32341|VM12_YEAST VACUOLAR ATPASE ASSEMBLY INTEGRAL ME... 55 0.63 2
sp|P07222|NPM_XENLA NUCLEOPHOSMIN (NPM) (NUCLEOLAR PHOSPH... 67 0.76 1
sp|P39904|SAC2_YEAST SAC2 PROTEIN. 62 0.87 3
sp|P16892|FUS3_YEAST MITOGEN-ACTIVATED PROTEIN KINASE FUS... 65 0.96 1
sp|Q04437|HDF2_YEAST HIGH AFFINITY DNA-BINDING FACTOR SUB... 59 0.97 4
sp|P52475|UL96_HSV7J PROTEIN U68. 58 0.999 1
sp|P15872|H13_WHEAT HISTONE H1.3 (FRAGMENTS). 44 0.9999 1
>sp|P23475|KU70_MOUSE ATP-DEPENDENT DNA HELICASE II, 70 KD SUBUNIT (KU70) (CTC
BOX BINDING FACTOR 75 KD SUBUNIT) (CTCBF) (CTC75) (FRAGMENT).
Length = 595
Score = 2934 (1343.8 bits), Expect = 0.0, P = 0.0
Identities = 573/588 (97%), Positives = 573/588 (97%)
Query: 8 SPDTGGEYKYSGRDSLIFLVDASRAMFESQGEDELTPFDMSIQCIQSVYTSKIISSDRDL 67
SPDTGGEYKYSGRDSLIFLVDASRAMFESQGEDELTPFDMSIQCIQSVYTSKIISSDRDL
Sbjct: 8 SPDTGGEYKYSGRDSLIFLVDASRAMFESQGEDELTPFDMSIQCIQSVYTSKIISSDRDL 67
Query: 68 LAVVFYGTEKDKNSVNFKNIYVLQDLDNPGAKRVLELDQFKGQQGKKHFRDTVGHGSDYS 127
LAVVFYGTEKDKNSVNFKNIYVLQDLDNPGAKRVLELDQFKGQQGKKHFRDTVGHGSDYS
Sbjct: 68 LAVVFYGTEKDKNSVNFKNIYVLQDLDNPGAKRVLELDQFKGQQGKKHFRDTVGHGSDYS 127
Query: 128 LSEVLWVCANLFSDVQLKMSHKRIMLFTNEDDPHGXXXXXXXXXXXXXXXLRDTGIFLDL 187
LSEVLWVCANLFSDVQLKMSHKRIMLFTNEDDPHG LRDTGIFLDL
Sbjct: 128 LSEVLWVCANLFSDVQLKMSHKRIMLFTNEDDPHGRDSAKASRARTKASDLRDTGIFLDL 187
Query: 188 MHLKKPGGFDVSVFYRDIITTAEDEDLGVHFEESSKLEDLLRKVRAKETKKRVLSRLKFK 247
MHLKKPGGFDVSVFYRDIITTAEDEDLGVHFEESSKLEDLLRKVRAKETKKRVLSRLKFK
Sbjct: 188 MHLKKPGGFDVSVFYRDIITTAEDEDLGVHFEESSKLEDLLRKVRAKETKKRVLSRLKFK 247
Query: 248 LGEDVVLMVGIYNLVQKANKPFPVRLYRETNEPVKTKTRTFNVNTGSLLLPSDTKRSLTY 307
LGEDVVLMVGIYNLVQKANKPFPVRLYRETNEPVKTKTRTFNVNTGSLLLPSDTKRSLTY
Sbjct: 248 LGEDVVLMVGIYNLVQKANKPFPVRLYRETNEPVKTKTRTFNVNTGSLLLPSDTKRSLTY 307
Query: 308 GTRQIVLEKEETEELKRFDEPGLILMGFKPTVMLKKQHYLRPSLFVYPEESLVSGSSTLF 367
GTRQIVLEKEETEELKRFDEPGLILMGFKPTVMLKKQHYLRPSLFVYPEESLVSGSSTLF
Sbjct: 308 GTRQIVLEKEETEELKRFDEPGLILMGFKPTVMLKKQHYLRPSLFVYPEESLVSGSSTLF 367
Query: 368 SALLTKCVEKKVIAVCRYTHRKNVSPYFVALVPQEEELDDQNIQVTPGGFQLVFLPYADD 427
SALLTKCVEKKVIAVCRYTHRKNVSPYFVALVPQEEELDDQNIQVTPGGFQLVFLPYADD
Sbjct: 368 SALLTKCVEKKVIAVCRYTHRKNVSPYFVALVPQEEELDDQNIQVTPGGFQLVFLPYADD 427
Query: 428 KRKVPFTEKVTANQEQIDKMKAIVQNVRFTYRSDSFENPVLQQHFRNLEALALDMMESEQ 487
KRKVPFTEKVTANQEQIDKMKAIVQNVRFTYRSDSFENPVLQQHFRNLEALALDMMESEQ
Sbjct: 428 KRKVPFTEKVTANQEQIDKMKAIVQNVRFTYRSDSFENPVLQQHFRNLEALALDMMESEQ 487
Query: 488 VVDLTLPKVEAIKKRLGSLADEFKELVYPPGYNPEGKVAKRKQDDEGSTSKKPKVELSEE 547
VVDLTLPKVEAIKKRLGSLADEFKELVYPPGYNPEGKVAKRKQDDEGSTSKKPKVELSEE
Sbjct: 488 VVDLTLPKVEAIKKRLGSLADEFKELVYPPGYNPEGKVAKRKQDDEGSTSKKPKVELSEE 547
Query: 548 ELKAHFRKGTLGKLTVPTLKDICKAHGLKSGPKKQELLDALIRHLEKN 595
ELKAHFRKGTLGKLTVPTLKDICKAHGLKSGPKKQELLDALIRHLEKN
Sbjct: 548 ELKAHFRKGTLGKLTVPTLKDICKAHGLKSGPKKQELLDALIRHLEKN 595
>sp|P12956|KU70_HUMAN ATP-DEPENDENT DNA HELICASE II, 70 KD SUBUNIT (LUPUS KU
AUTOANTIGEN PROTEIN P70) (70 KD SUBUNIT OF KU ANTIGEN)
(THYROID-LUPUS AUTOANTIGEN) (TLAA) (KU70) (CTC BOX BINDING FACTOR
75 KD SUBUNIT) (CTCBF) (CTC75).
Length = 608
Score = 2473 (1133.1 bits), Expect = 0.0, P = 0.0
Identities = 473/584 (80%), Positives = 518/584 (88%)
Query: 10 DTGGEYKYSGRDSLIFLVDASRAMFESQGEDELTPFDMSIQCIQSVYTSKIISSDRDLLA 69
+ G+YKYSGRDSLIFLVDAS+AMFESQ EDELTPFDMSIQCIQSVY SKIISSDRDLLA
Sbjct: 24 EASGDYKYSGRDSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLA 83
Query: 70 VVFYGTEKDKNSVNFKNIYVLQDLDNPGAKRVLELDQFKGQQGKKHFRDTVGHGSDYSLS 129
VVFYGTEKDKNSVNFKNIYVLQ+LDNPGAKR+LELDQFKGQQG+K F+D +GHGSDYSLS
Sbjct: 84 VVFYGTEKDKNSVNFKNIYVLQELDNPGAKRILELDQFKGQQGQKRFQDMMGHGSDYSLS 143
Query: 130 EVLWVCANLFSDVQLKMSHKRIMLFTNEDDPHGXXXXXXXXXXXXXXXLRDTGIFLDLMH 189
EVLWVCANLFSDVQ KMSHKRIMLFTNED+PHG LRDTGIFLDLMH
Sbjct: 144 EVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDLMH 203
Query: 190 LKKPGGFDVSVFYRDIITTAEDEDLGVHFEESSKLEDLLRKVRAKETKKRVLSRLKFKLG 249
LKKPGGFD+S+FYRDII+ AEDEDL VHFEESSKLEDLLRKVRAKET+KR LSRLK KL
Sbjct: 204 LKKPGGFDISLFYRDIISIAEDEDLRVHFEESSKLEDLLRKVRAKETRKRALSRLKLKLN 263
Query: 250 EDVVLMVGIYNLVQKANKPFPVRLYRETNEPVKTKTRTFNVNTGSLLLPSDTKRSLTYGT 309
+D+V+ VGIYNLVQKA KP P++LYRETNEPVKTKTRTFN +TG LLLPSDTKRS YG+
Sbjct: 264 KDIVISVGIYNLVQKALKPPPIKLYRETNEPVKTKTRTFNTSTGGLLLPSDTKRSQIYGS 323
Query: 310 RQIVLEKEETEELKRFDEPGLILMGFKPTVMLKKQHYLRPSLFVYPEESLVSGSSTLFSA 369
RQI+LEKEETEELKRFD+PGL+LMGFKP V+LKK HYLRPSLFVYPEESLV GSSTLFSA
Sbjct: 324 RQIILEKEETEELKRFDDPGLMLMGFKPLVLLKKHHYLRPSLFVYPEESLVIGSSTLFSA 383
Query: 370 LLTKCVEKKVIAVCRYTHRKNVSPYFVALVPQEEELDDQNIQVTPGGFQLVFLPYADDKR 429
LL KC+EK+V A+CRYT R+N+ PYFVALVPQEEELDDQ IQVTP GFQLVFLP+ADDKR
Sbjct: 384 LLIKCLEKEVAALCRYTPRRNIPPYFVALVPQEEELDDQKIQVTPPGFQLVFLPFADDKR 443
Query: 430 KVPFTEKVTANQEQIDKMKAIVQNVRFTYRSDSFENPVLQQHFRNLEALALDMMESEQVV 489
K+PFTEK+ A EQ+ KMKAIV+ +RFTYRSDSFENPVLQQHFRNLEALALD+ME EQ V
Sbjct: 444 KMPFTEKIMATPEQVGKMKAIVEKLRFTYRSDSFENPVLQQHFRNLEALALDLMEPEQAV 503
Query: 490 DLTLPKVEAIKKRLGSLADEFKELVYPPGYNPEGKVAKRKQDDEGSTSKKPKVELSEEEL 549
DLTLPKVEA+ KRLGSL DEFKELVYPP YNPEGKV KRK D+EGS SK+PKVE SEEEL
Sbjct: 504 DLTLPKVEAMNKRLGSLVDEFKELVYPPDYNPEGKVTKRKHDNEGSGSKRPKVEYSEEEL 563
Query: 550 KAHFRKGTLGKLTVPTLKDICKAHGLKSGPKKQELLDALIRHLE 593
K H KGTLGK TVP LK+ C+A+GLKSG KKQELL+AL +H +
Sbjct: 564 KTHISKGTLGKFTVPMLKEACRAYGLKSGLKKQELLEALTKHFQ 607
>sp|P32807|HDF1_YEAST HIGH AFFINITY DNA-BINDING FACTOR SUBUNIT 1 (KU70
HOMOLOG).
Length = 602
Score = 59 (29.8 bits), Expect = 2.8e-05, Sum P(6) = 2.8e-05
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 453 NVRFTYRSDSFENPVLQQHFRNLEALALDM 482
N+R Y F+NP+LQ+H++ L L +
Sbjct: 489 NLRDGYNPSDFKNPLLQKHYKVLHDYLLQI 518
Score = 51 (26.2 bits), Expect = 2.8e-05, Sum P(6) = 2.8e-05
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 350 SLFVYPEESLVSGSSTLFSALLTKCVEKKVIAVCRYTHRKNVSPYFVALVP 400
S F+ P+E+ GS ++LL +K IA+ + N P L P
Sbjct: 384 SSFIVPDEAKYEGSIRTLASLLKILRKKDKIAILWGKLKSNSHPSLYTLSP 434
Score = 49 (25.3 bits), Expect = 2.8e-05, Sum P(6) = 2.8e-05
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 143 QLKMSHKRIMLFTNEDDP 160
Q ++S+KR+ LFT+ D P
Sbjct: 160 QKQLSNKRVFLFTDIDKP 177
Score = 43 (22.5 bits), Expect = 2.8e-05, Sum P(6) = 2.8e-05
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 10 DTGGEYKYSGRDSLIFLVDASRAMFESQGEDE 41
D G K+ + ++F ++ S MF+ + E
Sbjct: 19 DETGYRKFDIHEGILFCIELSETMFKESSDLE 50
Score = 42 (22.1 bits), Expect = 2.8e-05, Sum P(6) = 2.8e-05
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 416 GFQLVFLPYADDKRKVP 432
GF L +P+ D+ RK P
Sbjct: 443 GFYLYRVPFLDEIRKFP 459
Score = 36 (19.3 bits), Expect = 2.8e-05, Sum P(6) = 2.8e-05
Identities = 10/70 (14%), Positives = 30/70 (42%)
Query: 35 ESQGEDELTPFDMSIQCIQSVYTSKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQDLD 94
ES + +P ++ + + + +I+ + FY ++ ++ L+D++
Sbjct: 45 ESSDLEYKSPLLEILESLDELMSQLVITRPGTAIGCYFYYCNREDAKEGIYELFPLRDIN 104
Query: 95 NPGAKRVLEL 104
K++ +L
Sbjct: 105 ATFMKKLNDL 114
>sp|Q03673|YMO3_YEAST HYPOTHETICAL 22.7 KD PROTEIN IN CDC5-MVP1 INTERGENIC
REGION.
Length = 198
Score = 78 (38.5 bits), Expect = 0.041, Sum P(2) = 0.040
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 560 KLTVPTLKDICKAHGLKSGPKKQELLDALIRH 591
K TV LK+ CK+ GLK +K +LL LI H
Sbjct: 71 KFTVKVLKEQCKSRGLKLSGRKSDLLQRLITH 102
Score = 34 (18.4 bits), Expect = 0.041, Sum P(2) = 0.040
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 190 LKKPGGFDVSV 200
LK+PG + VS+
Sbjct: 34 LKQPGAYKVSL 44
>sp|P32341|VM12_YEAST VACUOLAR ATPASE ASSEMBLY INTEGRAL MEMBRANE PROTEIN VMA12
(PROTEIN VPH2).
Length = 215
Score = 55 (28.0 bits), Expect = 0.99, Sum P(2) = 0.63
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 26 LVDASRAMFESQGEDELTPFDMSIQCIQSVYT 57
+V S+++F Q +DELTP ++ Q + V T
Sbjct: 106 MVKRSKSVFSLQEDDELTPSQINKQIKEQVTT 137
Score = 48 (24.8 bits), Expect = 0.99, Sum P(2) = 0.63
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 213 DLGVHFEESSKLEDLLRKVRAKETKKRVLSRL 244
D+ V+ KLE+ K + K KK+VLS++
Sbjct: 182 DVVVYNSYLKKLEEAKVKEKTKVEKKKVLSKI 213
>sp|P07222|NPM_XENLA NUCLEOPHOSMIN (NPM) (NUCLEOLAR PHOSPHOPROTEIN B23)
(NUMATRIN) (NUCLEOLAR PROTEIN NO38).
Length = 299
Score = 67 (33.5 bits), Expect = 1.4, P = 0.76
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 521 PEGKVAKRKQDDEGSTSKKPKVELSEEELKA 551
P+ K KQD + T K PK LS EE+KA
Sbjct: 220 PKTPEQKGKQDTKPQTPKTPKTPLSSEEIKA 250
>sp|P39904|SAC2_YEAST SAC2 PROTEIN.
Length = 641
Score = 62 (31.2 bits), Expect = 2.1, Sum P(3) = 0.87
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 218 FEESSKLEDLLRKVRAKETKKRVLSRLKFKLGEDVVLMVGIYNLVQKANKPFP 270
F++ +L D+L+ V + +K+ ++S++K + V I N + K K FP
Sbjct: 185 FDKLCQLLDILKNVILERSKRLIISKIKTLRSHNPVPSQRIQNKLLKVQKIFP 237
Score = 44 (23.0 bits), Expect = 2.1, Sum P(3) = 0.87
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 99 KRVLELDQFKGQQGKKHFRDTVGHGSD 125
K VL LDQ K Q K+ RD D
Sbjct: 5 KEVLSLDQDKFDQLKETSRDKTNETDD 31
Score = 38 (20.2 bits), Expect = 2.1, Sum P(3) = 0.87
Identities = 11/44 (25%), Positives = 17/44 (38%)
Query: 419 LVFLPYADDKRKVPFTEKVTANQEQIDKMKAIVQNVRFTYRSDS 462
L F Y F K+ E+IDK I + + + D+
Sbjct: 305 LFFSNYLTTSASNAFYNKLPVTDEKIDKYFQIKKRLNILTQEDN 348
Score = 37 (19.8 bits), Expect = 2.7, Sum P(3) = 0.93
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 488 VVDLTLPKVEAIKKRLGSLADE 509
V D + K IKKRL L E
Sbjct: 325 VTDEKIDKYFQIKKRLNILTQE 346
>sp|P16892|FUS3_YEAST MITOGEN-ACTIVATED PROTEIN KINASE FUS3 (EC 2.7.1.-) (MAP
KINASE FUS3).
Length = 353
Score = 65 (32.6 bits), Expect = 3.3, P = 0.96
Identities = 12/62 (19%), Positives = 31/62 (50%)
Query: 41 ELTPFDMSIQCIQSVYTSKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQDLDNPGAKR 100
++ PFD + ++++ KI+ + + + ++ + NF +Y++Q+L R
Sbjct: 43 KIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEVYIIQELMQTDLHR 102
Query: 101 VL 102
V+
Sbjct: 103 VI 104
>sp|Q04437|HDF2_YEAST HIGH AFFINITY DNA-BINDING FACTOR SUBUNIT 2 (KU80
HOMOLOG).
Length = 629
Score = 59 (29.8 bits), Expect = 3.4, Sum P(4) = 0.97
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 367 FSALLTKCVEKKVIAVCRYTHRKNVSPYFVALVP 400
FSAL+ +E + IAV RY +K+ AL P
Sbjct: 380 FSALVDVMLENRKIAVARYVSKKDSEVNMCALCP 413
Score = 41 (21.6 bits), Expect = 3.4, Sum P(4) = 0.97
Identities = 14/57 (24%), Positives = 22/57 (38%)
Query: 303 RSLTYGTRQIVLEKEETEELKRFDEPGLILMGFKPTVMLKKQHYLRPSLFVYPEESL 359
++ YG +VL ++ PGL L GF L + S F+ + L
Sbjct: 315 KAYRYGADYVVLPSVLVDQTVYESFPGLDLRGFLNREALPRYFLTSESSFITADTRL 371
Score = 40 (21.2 bits), Expect = 3.4, Sum P(4) = 0.97
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 114 KHFRDTVGHGSDYSLSEVLWVCANLFSDVQLKMSHKRIMLFTNEDD 159
+H D+ G + +L V ++ Q + K+I++FT+ D
Sbjct: 93 QHSHDSSNEGLQSMIQCLLVVSLDIKQQFQARKILKQIVVFTDNLD 138
Score = 35 (18.9 bits), Expect = 3.4, Sum P(4) = 0.97
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 422 LPYADDKRKVPF 433
LP+A+D+R F
Sbjct: 436 LPFAEDERVTDF 447
>sp|P52475|UL96_HSV7J PROTEIN U68.
Length = 114
Score = 58 (29.4 bits), Expect = 6.7, P = 1.0
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 224 LEDLLRKVRAKETKKRVLSRLKFKLGEDVVLMV 256
L +L+++ +K +K+ LK KLGED L V
Sbjct: 3 LHELIKQTMSKNLEKKHYELLKLKLGEDHPLSV 35
>sp|P15872|H13_WHEAT HISTONE H1.3 (FRAGMENTS).
Length = 31
Score = 44 (23.0 bits), Expect = 8.9, P = 1.0
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 496 VEAIKKRLGSLADEFKELV 514
+ A+K+R GS+ + K+LV
Sbjct: 6 ITALKERTGSMLTQIKKLV 24
Parameters:
cpus=1
filter=seg
compat1.4
ctxfactor=1.00
E=10
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.136 0.382 same same same
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 595 595 10. 63 3 11 22 0.21 34
Statistics:
Database: /am/db/blast/sp35
Title: SWISS-PROT Release 35.0
Released: November 30, 1997
Posted: 2:27:45 PM CST Dec 15, 1997
Format: BLAST-1.4
# of letters in database: 25,083,768
# of sequences in database: 69,113
# of database sequences satisfying E: 11
No. of states in DFA: 561 (55 KB)
Total size of DFA: 169 KB (192 KB)
Time to generate neighborhood: 0.01u 0.02s 0.03t Elapsed: 00:00:00
No. of threads or processors used: 1
Search cpu time: 24.93u 0.28s 25.21t Elapsed: 00:00:26
Total cpu time: 24.96u 0.32s 25.28t Elapsed: 00:00:26
Start: Wed Sep 20 17:36:40 2000 End: Wed Sep 20 17:37:06 2000
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