BLASTP 2.0MP-WashU [04-Sep-2000]
Copyright (C) 1996-2000 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2000) http://blast.wustl.edu
Query= gi|125730|sp|P23475|KU70_MOUSE ATP-DEPENDENT DNA HELICASE II, 70 KD
SUBUNIT HOMOLOG (LUPUS KU AUTOANTIGEN PROTEIN P70) (70 KD SUBUNIT OF KU
ANTIGEN) (THYROID-LUPUS AUTOANTIGEN) (TLAA) (CTC BOX BINDING FACTOR 75 KD
SUBUNIT) (CTCBF) (CTC75).>gi|198637 (M38700) p70 Ku lupus autoantigen [Mus
musculus]
(595 letters)
Database: SWISS-PROT Release 35.0
69,113 sequences; 25,083,768 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
sp|P23475|KU70_MOUSE ATP-DEPENDENT DNA HELICASE II, 70 KD... 2934 8.5e-307 1
sp|P12956|KU70_HUMAN ATP-DEPENDENT DNA HELICASE II, 70 KD... 2473 6.0e-258 1
sp|P32807|HDF1_YEAST HIGH AFFINITY DNA-BINDING FACTOR SUB... 221 6.5e-16 1
sp|Q04437|HDF2_YEAST HIGH AFFINITY DNA-BINDING FACTOR SUB... 112 0.00056 1
sp|P27641|KU86_MOUSE ATP-DEPENDENT DNA HELICASE II, 86 KD... 109 0.0014 1
sp|P13010|KU86_HUMAN ATP-DEPENDENT DNA HELICASE II, 86 KD... 104 0.0050 1
sp|P45912|YQAO_BACSU HYPOTHETICAL 7.6 KD PROTEIN IN SPOII... 64 0.15 1
sp|P03775|V03_BPT7 GENE 0.3 PROTEIN. 72 0.36 1
sp|Q03673|YMO3_YEAST HYPOTHETICAL 22.7 KD PROTEIN IN CDC5... 78 0.38 1
sp|P37899|HS70_PYRSA HEAT SHOCK 70 KD PROTEIN. 84 0.47 1
sp|Q10369|YDBJ_SCHPO HYPOTHETICAL PROTEIN C22E12.19 IN CH... 77 0.57 1
sp|P46211|EFG_AQUPY ELONGATION FACTOR G (EF-G). 83 0.59 1
sp|P21169|DCOR_ECOLI ORNITHINE DECARBOXYLASE, CONSTITUTIV... 79 0.92 1
sp|P50519|HSP9_SCHPO HEAT SHOCK PROTEIN HSP9. 51 0.98 1
sp|P48780|RS15_MYCFL 30S RIBOSOMAL PROTEIN S15. 59 0.99 1
sp|Q09088|OSA6_BORBU OUTER SURFACE PROTEIN A PRECURSOR. 71 0.994 1
sp|P19494|LRP_ECOLI LEUCINE-RESPONSIVE REGULATORY PROTEIN. 67 0.997 1
sp|P37425|LRP_SERMA LEUCINE-RESPONSIVE REGULATORY PROTEIN. 67 0.997 1
sp|P49792|N358_HUMAN NUCLEAR PORE COMPLEX PROTEIN NUP358 ... 82 0.998 1
sp|P11778|MYSB_PAPHA MYOSIN HEAVY CHAIN, CARDIAC MUSCLE B... 69 0.9993 1
sp|P38525|EFG_THEMA ELONGATION FACTOR G (EF-G). 74 0.9997 1
sp|P41960|RL26_BRUPA 60S RIBOSOMAL PROTEIN L26 (FRAGMENT). 48 0.9998 1
sp|P03546|VMP_CAMVC MOVEMENT PROTEIN (CELL-TO-CELL TRANSP... 70 0.9998 1
sp|P03547|VMP_CAMVD MOVEMENT PROTEIN (CELL-TO-CELL TRANSP... 70 0.9998 1
sp|Q02968|VMP_CAMVE MOVEMENT PROTEIN (CELL-TO-CELL TRANSP... 70 0.9998 1
>sp|P23475|KU70_MOUSE ATP-DEPENDENT DNA HELICASE II, 70 KD SUBUNIT (KU70) (CTC
BOX BINDING FACTOR 75 KD SUBUNIT) (CTCBF) (CTC75) (FRAGMENT).
Length = 595
Score = 2934 (1037.9 bits), Expect = 8.5e-307, P = 8.5e-307
Identities = 573/588 (97%), Positives = 573/588 (97%)
Query: 8 SPDTGGEYKYSGRDSLIFLVDASRAMFESQGEDELTPFDMSIQCIQSVYTSKIISSDRDL 67
SPDTGGEYKYSGRDSLIFLVDASRAMFESQGEDELTPFDMSIQCIQSVYTSKIISSDRDL
Sbjct: 8 SPDTGGEYKYSGRDSLIFLVDASRAMFESQGEDELTPFDMSIQCIQSVYTSKIISSDRDL 67
Query: 68 LAVVFYGTEKDKNSVNFKNIYVLQDLDNPGAKRVLELDQFKGQQGKKHFRDTVGHGSDYS 127
LAVVFYGTEKDKNSVNFKNIYVLQDLDNPGAKRVLELDQFKGQQGKKHFRDTVGHGSDYS
Sbjct: 68 LAVVFYGTEKDKNSVNFKNIYVLQDLDNPGAKRVLELDQFKGQQGKKHFRDTVGHGSDYS 127
Query: 128 LSEVLWVCANLFSDVQLKMSHKRIMLFTNEDDPHGXXXXXXXXXXXXXXXLRDTGIFLDL 187
LSEVLWVCANLFSDVQLKMSHKRIMLFTNEDDPHG LRDTGIFLDL
Sbjct: 128 LSEVLWVCANLFSDVQLKMSHKRIMLFTNEDDPHGRDSAKASRARTKASDLRDTGIFLDL 187
Query: 188 MHLKKPGGFDVSVFYRDIITTAEDEDLGVHFEESSKLEDLLRKVRAKETKKRVLSRLKFK 247
MHLKKPGGFDVSVFYRDIITTAEDEDLGVHFEESSKLEDLLRKVRAKETKKRVLSRLKFK
Sbjct: 188 MHLKKPGGFDVSVFYRDIITTAEDEDLGVHFEESSKLEDLLRKVRAKETKKRVLSRLKFK 247
Query: 248 LGEDVVLMVGIYNLVQKANKPFPVRLYRETNEPVKTKTRTFNVNTGSLLLPSDTKRSLTY 307
LGEDVVLMVGIYNLVQKANKPFPVRLYRETNEPVKTKTRTFNVNTGSLLLPSDTKRSLTY
Sbjct: 248 LGEDVVLMVGIYNLVQKANKPFPVRLYRETNEPVKTKTRTFNVNTGSLLLPSDTKRSLTY 307
Query: 308 GTRQIVLEKEETEELKRFDEPGLILMGFKPTVMLKKQHYLRPSLFVYPEESLVSGSSTLF 367
GTRQIVLEKEETEELKRFDEPGLILMGFKPTVMLKKQHYLRPSLFVYPEESLVSGSSTLF
Sbjct: 308 GTRQIVLEKEETEELKRFDEPGLILMGFKPTVMLKKQHYLRPSLFVYPEESLVSGSSTLF 367
Query: 368 SALLTKCVEKKVIAVCRYTHRKNVSPYFVALVPQEEELDDQNIQVTPGGFQLVFLPYADD 427
SALLTKCVEKKVIAVCRYTHRKNVSPYFVALVPQEEELDDQNIQVTPGGFQLVFLPYADD
Sbjct: 368 SALLTKCVEKKVIAVCRYTHRKNVSPYFVALVPQEEELDDQNIQVTPGGFQLVFLPYADD 427
Query: 428 KRKVPFTEKVTANQEQIDKMKAIVQNVRFTYRSDSFENPVLQQHFRNLEALALDMMESEQ 487
KRKVPFTEKVTANQEQIDKMKAIVQNVRFTYRSDSFENPVLQQHFRNLEALALDMMESEQ
Sbjct: 428 KRKVPFTEKVTANQEQIDKMKAIVQNVRFTYRSDSFENPVLQQHFRNLEALALDMMESEQ 487
Query: 488 VVDLTLPKVEAIKKRLGSLADEFKELVYPPGYNPEGKVAKRKQDDEGSTSKKPKVELSEE 547
VVDLTLPKVEAIKKRLGSLADEFKELVYPPGYNPEGKVAKRKQDDEGSTSKKPKVELSEE
Sbjct: 488 VVDLTLPKVEAIKKRLGSLADEFKELVYPPGYNPEGKVAKRKQDDEGSTSKKPKVELSEE 547
Query: 548 ELKAHFRKGTLGKLTVPTLKDICKAHGLKSGPKKQELLDALIRHLEKN 595
ELKAHFRKGTLGKLTVPTLKDICKAHGLKSGPKKQELLDALIRHLEKN
Sbjct: 548 ELKAHFRKGTLGKLTVPTLKDICKAHGLKSGPKKQELLDALIRHLEKN 595
>sp|P12956|KU70_HUMAN ATP-DEPENDENT DNA HELICASE II, 70 KD SUBUNIT (LUPUS KU
AUTOANTIGEN PROTEIN P70) (70 KD SUBUNIT OF KU ANTIGEN)
(THYROID-LUPUS AUTOANTIGEN) (TLAA) (KU70) (CTC BOX BINDING FACTOR
75 KD SUBUNIT) (CTCBF) (CTC75).
Length = 608
Score = 2473 (875.6 bits), Expect = 6.0e-258, P = 6.0e-258
Identities = 473/584 (80%), Positives = 518/584 (88%)
Query: 10 DTGGEYKYSGRDSLIFLVDASRAMFESQGEDELTPFDMSIQCIQSVYTSKIISSDRDLLA 69
+ G+YKYSGRDSLIFLVDAS+AMFESQ EDELTPFDMSIQCIQSVY SKIISSDRDLLA
Sbjct: 24 EASGDYKYSGRDSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLA 83
Query: 70 VVFYGTEKDKNSVNFKNIYVLQDLDNPGAKRVLELDQFKGQQGKKHFRDTVGHGSDYSLS 129
VVFYGTEKDKNSVNFKNIYVLQ+LDNPGAKR+LELDQFKGQQG+K F+D +GHGSDYSLS
Sbjct: 84 VVFYGTEKDKNSVNFKNIYVLQELDNPGAKRILELDQFKGQQGQKRFQDMMGHGSDYSLS 143
Query: 130 EVLWVCANLFSDVQLKMSHKRIMLFTNEDDPHGXXXXXXXXXXXXXXXLRDTGIFLDLMH 189
EVLWVCANLFSDVQ KMSHKRIMLFTNED+PHG LRDTGIFLDLMH
Sbjct: 144 EVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDLMH 203
Query: 190 LKKPGGFDVSVFYRDIITTAEDEDLGVHFEESSKLEDLLRKVRAKETKKRVLSRLKFKLG 249
LKKPGGFD+S+FYRDII+ AEDEDL VHFEESSKLEDLLRKVRAKET+KR LSRLK KL
Sbjct: 204 LKKPGGFDISLFYRDIISIAEDEDLRVHFEESSKLEDLLRKVRAKETRKRALSRLKLKLN 263
Query: 250 EDVVLMVGIYNLVQKANKPFPVRLYRETNEPVKTKTRTFNVNTGSLLLPSDTKRSLTYGT 309
+D+V+ VGIYNLVQKA KP P++LYRETNEPVKTKTRTFN +TG LLLPSDTKRS YG+
Sbjct: 264 KDIVISVGIYNLVQKALKPPPIKLYRETNEPVKTKTRTFNTSTGGLLLPSDTKRSQIYGS 323
Query: 310 RQIVLEKEETEELKRFDEPGLILMGFKPTVMLKKQHYLRPSLFVYPEESLVSGSSTLFSA 369
RQI+LEKEETEELKRFD+PGL+LMGFKP V+LKK HYLRPSLFVYPEESLV GSSTLFSA
Sbjct: 324 RQIILEKEETEELKRFDDPGLMLMGFKPLVLLKKHHYLRPSLFVYPEESLVIGSSTLFSA 383
Query: 370 LLTKCVEKKVIAVCRYTHRKNVSPYFVALVPQEEELDDQNIQVTPGGFQLVFLPYADDKR 429
LL KC+EK+V A+CRYT R+N+ PYFVALVPQEEELDDQ IQVTP GFQLVFLP+ADDKR
Sbjct: 384 LLIKCLEKEVAALCRYTPRRNIPPYFVALVPQEEELDDQKIQVTPPGFQLVFLPFADDKR 443
Query: 430 KVPFTEKVTANQEQIDKMKAIVQNVRFTYRSDSFENPVLQQHFRNLEALALDMMESEQVV 489
K+PFTEK+ A EQ+ KMKAIV+ +RFTYRSDSFENPVLQQHFRNLEALALD+ME EQ V
Sbjct: 444 KMPFTEKIMATPEQVGKMKAIVEKLRFTYRSDSFENPVLQQHFRNLEALALDLMEPEQAV 503
Query: 490 DLTLPKVEAIKKRLGSLADEFKELVYPPGYNPEGKVAKRKQDDEGSTSKKPKVELSEEEL 549
DLTLPKVEA+ KRLGSL DEFKELVYPP YNPEGKV KRK D+EGS SK+PKVE SEEEL
Sbjct: 504 DLTLPKVEAMNKRLGSLVDEFKELVYPPDYNPEGKVTKRKHDNEGSGSKRPKVEYSEEEL 563
Query: 550 KAHFRKGTLGKLTVPTLKDICKAHGLKSGPKKQELLDALIRHLE 593
K H KGTLGK TVP LK+ C+A+GLKSG KKQELL+AL +H +
Sbjct: 564 KTHISKGTLGKFTVPMLKEACRAYGLKSGLKKQELLEALTKHFQ 607
>sp|P32807|HDF1_YEAST HIGH AFFINITY DNA-BINDING FACTOR SUBUNIT 1 (KU70
HOMOLOG).
Length = 602
Score = 221 (82.9 bits), Expect = 6.5e-16, P = 6.5e-16
Identities = 126/549 (22%), Positives = 225/549 (40%)
Query: 10 DTGGEYKYSGRDSLIFLVDASRAMFESQGEDEL-TPFDMSIQCIQSVYTSKIISSDRDLL 68
D G K+ + ++F ++ S MF+ + E +P ++ + + + +I+ +
Sbjct: 19 DETGYRKFDIHEGILFCIELSETMFKESSDLEYKSPLLEILESLDELMSQLVITRPGTAI 78
Query: 69 AVVFYGTEKDKNSVNFKNIYVLQDLDNPGAKRVLEL--DQFKGQQGKKH---FRDTVGHG 123
FY ++ ++ L+D++ K++ +L D G+ F+ T G
Sbjct: 79 GCYFYYCNREDAKEGIYELFPLRDINATFMKKLNDLLEDLSSGRISLYDYFMFQQT-GSE 137
Query: 124 SDYSLSEVLWVCANLFSDV---QLKMSHKRIMLFTNEDDPH-GXXXXXXXXXXXXXXXLR 179
LS + + F + Q ++S+KR+ LFT+ D P L
Sbjct: 138 KQVRLSVLFTFMLDTFLEEIPGQKQLSNKRVFLFTDIDKPQEAQDIDERARLRRLTIDLF 197
Query: 180 DTGI-FLDLM--HLKKPGGFDVSVFYRDIIT----TAEDEDLGVHFE-ESSKLEDLLRKV 231
D + F + KP FD + FY DI+ T E+ L F+ S+K D + +
Sbjct: 198 DNKVNFATFFIGYADKP--FD-NEFYSDILQLGSHTNENTGLDSEFDGPSTKPIDA-KYI 253
Query: 232 RAKETKKRVLSRLKFK----LGEDVVLMVGI--YNLV--QKANKPFP-VRLYRETNEPVK 282
+++ +K+ + R+ F+ L E +VG+ Y + +KA + V + + +
Sbjct: 254 KSRILRKKEVKRIMFQCPLILDEKTNFIVGVKGYTMYTHEKAGVRYKLVYEHEDIRQEAY 313
Query: 283 TKTRTFNVNTGSLLLPSDTKRSLTYGTRQIVLEKEETE-ELKRFDEPGLIL--MGFKPTV 339
+K + N TG + T + YG I L + + ++ + + L +GF+ +
Sbjct: 314 SKRKFLNPITGEDVT-GKTVKVYPYGDLDINLSDSQDQIVMEAYTQKDAFLKIIGFRSSS 372
Query: 340 MLKKQHYLR---PSLFVYPEESLVSGSSTLFSALLTKCVEKKVIAVCRYTHRKNVSPYFV 396
K HY S F+ P+E+ GS ++LL +K IA+ + N P
Sbjct: 373 --KSIHYFNNIDKSSFIVPDEAKYEGSIRTLASLLKILRKKDKIAILWGKLKSNSHPSLY 430
Query: 397 ALVPQEEELDDQNIQVTPGGFQLVFLPYADDKRKVPFTEKVTANQEQ---IDKMKAIVQ- 452
L P + D N GF L +P+ D+ RK P E D MK + Q
Sbjct: 431 TLSPSS--VKDYN-----EGFYLYRVPFLDEIRKFPSLLSYDDGSEHKLDYDNMKKVTQS 483
Query: 453 -----NVRFTYRSDSFENPVLQQHFRNLEALALDMMESEQVVDLT-LPKVEAIKKRLGSL 506
N+R Y F+NP+LQ+H++ L L + E D P + K R+
Sbjct: 484 IMGYFNLRDGYNPSDFKNPLLQKHYKVLHDYLLQI---ETTFDENETPNTK--KDRMMRE 538
Query: 507 ADEFKELVY 515
D ++L Y
Sbjct: 539 DDSLRKLYY 547
>sp|Q04437|HDF2_YEAST HIGH AFFINITY DNA-BINDING FACTOR SUBUNIT 2 (KU80
HOMOLOG).
Length = 629
Score = 112 (44.5 bits), Expect = 0.00056, P = 0.00056
Identities = 49/167 (29%), Positives = 73/167 (43%)
Query: 274 YRETNEPVKTKTRTFNVNTGSLLLP-SDTKRSLT----YGTRQIVLEKEETEELKRFDEP 328
Y NE K K + + +GS +P + +K S+T YG +VL ++ P
Sbjct: 282 YEIHNEGNK-KNVSEDDQSGSSYIPVTISKDSVTKAYRYGADYVVLPSVLVDQTVYESFP 340
Query: 329 GLILMGFKPTVMLKKQHYLRPSLFVYPEESLVSGSSTL-FSALLTKCVEKKVIAVCRYTH 387
GL L GF L + S F+ + L S + FSAL+ +E + IAV RY
Sbjct: 341 GLDLRGFLNREALPRYFLTSESSFITADTRLGCQSDLMAFSALVDVMLENRKIAVARYVS 400
Query: 388 RKNVSPYFVALVPQEEELDDQNIQVT-PGGFQLVFLPYADDKRKVPF 433
+K+ AL P E + N + L LP+A+D+R F
Sbjct: 401 KKDSEVNMCALCPVLIEHSNINSEKKFVKSLTLCRLPFAEDERVTDF 447
>sp|P27641|KU86_MOUSE ATP-DEPENDENT DNA HELICASE II, 86 KD SUBUNIT (LUPUS KU
AUTOANTIGEN PROTEIN P86) (86 KD SUBUNIT OF KU ANTIGEN)
(THYROID-LUPUS AUTOANTIGEN) (TLAA) (CTC BOX BINDING FACTOR 85 KD
SUBUNIT) (CTCBF) (CTC85) (NUCLEAR FACTOR IV) (KU80).
Length = 732
Score = 109 (43.4 bits), Expect = 0.0014, P = 0.0014
Identities = 80/386 (20%), Positives = 173/386 (44%)
Query: 205 IITTAEDEDLGVHFEESSKLEDLLRKVRA-KETKKRVLS-RLKFKLGEDVVLMVGIY-NL 261
++ + E ED G+ +E + LR++ K+ ++R + + +G ++ + + Y ++
Sbjct: 211 VMLSLEGED-GL--DEIYSFSESLRQLCVFKKIERRSMPWPCQLTIGPNLSIKIVAYKSI 267
Query: 262 VQKANKPFPVRLYRET--NEPVKTKT-RTFNVNTGSLLLPSDTKRSLTYGTRQIVLEKEE 318
VQ+ K V + T E ++ +T N + + + DT + YG+ I K +
Sbjct: 268 VQEKFKKSWVVVDARTLKKEDIQKETVYCLNDDDETEVSKEDTIQGYRYGSDIIPFSKVD 327
Query: 319 TEELKRFDEPGLI-LMGFKPTVMLKKQHYL-RPSLFVYPEESLVSGSSTLFSALLTKCVE 376
E++K E ++GF + + ++ ++ L V+ + + + L S+L+ E
Sbjct: 328 EEQMKYKSEGKCFSVLGFCKSSQVHRRFFMGHQVLKVFAAKDDEAAAVAL-SSLVHALDE 386
Query: 377 KKVIAVCRYTHRKNVSPYF--VALVPQE--EELDDQNIQVTPGGFQLVFLPYADDKRKVP 432
++A+ RY + K +P +L ++ E L + Q +F ++K+ P
Sbjct: 387 LNMVAIVRYAYDKRSNPQVGVASLYIKDAYERLVYVQLPFMEDLRQYMFSSLKNNKKCTP 446
Query: 433 FTEKVTANQEQIDKMKAIVQN-----VRFTYRSDSFENPVLQQHFRNLEALALDMME--- 484
+++A + ID M + +N V + + NP Q+ ++ L AL + E
Sbjct: 447 TEAQLSAIDDLIDSMSLVKKNEEEDIVEDLFPASKIPNPEFQRLYQCLLHRALHLQERLP 506
Query: 485 --SEQVVDLTLPKVEAIKKRLGSLADEFKELVYP--PGYNPEGKVAKRK--QD--DEGST 536
+ ++++ P E +K++ S + K L +P + +V + QD +EG
Sbjct: 507 PIQQHILNIWDPPTE-MKQKCESPPLKVKTL-FPLTEVIKKKNQVTAQDVFQDNHEEGPA 564
Query: 537 SKKPKVELSEEELK-AHFRKGTLGKL 561
+KK K E E+ + + +G + K+
Sbjct: 565 AKKYKTEKEEDHISISSLAEGNITKV 590
>sp|P13010|KU86_HUMAN ATP-DEPENDENT DNA HELICASE II, 86 KD SUBUNIT (LUPUS KU
AUTOANTIGEN PROTEIN P86) (86 KD SUBUNIT OF KU ANTIGEN)
(THYROID-LUPUS AUTOANTIGEN) (TLAA) (CTC BOX BINDING FACTOR 85 KD
SUBUNIT) (CTCBF) (CTC85) (NUCLEAR FACTOR IV) (KU80).
Length = 731
Score = 104 (41.7 bits), Expect = 0.0050, P = 0.0050
Identities = 124/633 (19%), Positives = 259/633 (40%)
Query: 18 SGRDSLIFL-VDASRAMFESQGEDELTPFDMSIQCIQSVYTSKIISSDRDLLAVVFYGTE 76
SG + + L +D M S E +PF+ + + I ++ + ++D +A+V +GT+
Sbjct: 3 SGNKAAVVLCMDVGFTMSNSIPGIE-SPFEQAKKVITMFVQRQVFAENKDEIALVLFGTD 61
Query: 77 KDKNSVN----FKNIYV-----------LQDLDN---PGAKRVLELDQF-KGQQGKKHFR 117
N ++ ++NI V L+D+++ PG+++ LD +H
Sbjct: 62 GTDNPLSGGDQYQNITVHRHLMLPDFDLLEDIESKIQPGSQQADFLDALIVSMDVIQH-- 119
Query: 118 DTVGHGSDYSLSEVLWVCANLFSDVQLKM---SHKRIMLFTNEDDPHGXXXXXXXXXXXX 174
+T+G + E+ ++ FS QL + S K+ + P
Sbjct: 120 ETIGKKFEKRHIEIFTDLSSRFSKSQLDIIIHSLKKCDISLQFFLPFSLGKEDGSGDRGD 179
Query: 175 X-XXLRDTGIFLDLMHLKKPGGFDVSVFYRDIITTAEDEDLGVHFEESSKLEDLLRKVRA 233
L G L + + + + + ++ + E ED G+ +E + LRK+
Sbjct: 180 GPFRLGGHGPSFPLKGITEQQKEGLEIV-KMVMISLEGED-GL--DEIYSFSESLRKLCV 235
Query: 234 -KETKKRVLS-RLKFKLGEDVVLMVGIYN--LVQKANKPFPVRLYRET--NEPVKTKT-R 286
K+ ++ + + +G ++ + + Y L ++ K + V + +T E ++ +T
Sbjct: 236 FKKIERHSIHWPCRLTIGSNLSIRIAAYKSILQERVKKTWTV-VDAKTLKKEDIQKETVY 294
Query: 287 TFNVNTGSLLLPSDTKRSLTYGTRQIVLEKEETEELKRFDEPGLI-LMGFKPTVMLKKQH 345
N + + +L D + YG+ + K + E++K E ++GF + ++++
Sbjct: 295 CLNDDDETEVLKEDIIQGFRYGSDIVPFSKVDEEQMKYKSEGKCFSVLGFCKSSQVQRRF 354
Query: 346 YL-RPSLFVYPEESLVSGSSTLFSALLTKCVEKKVIAVCRYTHRKNVSPYFVALVPQEEE 404
++ L V+ + + L S+L+ + ++A+ RY + K +P P +
Sbjct: 355 FMGNQVLKVFAARDDEAAAVAL-SSLIHALDDLDMVAIVRYAYDKRANPQVGVAFPHIKH 413
Query: 405 LDDQNIQVTPGGF----QLVFLPYADDKRKVPFTEKVTANQEQIDKMKAIVQNVRFTYRS 460
+ + V Q +F + K+ P ++ A ID M ++ +
Sbjct: 414 NYECLVYVQLPFMEDLRQYMFSSLKNSKKYAPTEAQLNAVDALIDSMSLAKKDEKTDTLE 473
Query: 461 DSFE-----NPVLQQHFRNLEALALDMME-----SEQVVDLTLPKVEAIKKRLGSLADEF 510
D F NP Q+ F+ L AL E + + ++ P E K L+ +
Sbjct: 474 DLFPTTKIPNPRFQRLFQCLLHRALHPREPLPPIQQHIWNMLNPPAEVTTKSQIPLS-KI 532
Query: 511 KELVYPPGYNPEGKVAKRK--QD--DEGSTSKKPKVELSEEELKAHFRKGTLGKLTVPTL 566
K L + +V ++ QD ++G T+KK L E+ AHF +L + +V ++
Sbjct: 533 KTLFPLIEAKKKDQVTAQEIFQDNHEDGPTAKK----LKTEQGGAHFSVSSLAEGSVTSV 588
Query: 567 KDICKAHGLKSGPKK-----QELLDALIRHLEK 594
+ A + K+ +E + LI H+E+
Sbjct: 589 GSVNPAENFRVLVKQKKASFEEASNQLINHIEQ 621
>sp|P45912|YQAO_BACSU HYPOTHETICAL 7.6 KD PROTEIN IN SPOIIIC-CWLA INTERGENIC
REGION.
Length = 68
Score = 64 (27.6 bits), Expect = 0.17, P = 0.15
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 82 VNFKNIYVLQDLDNPGAKRVLELDQFKGQQGKKHFRDTVGHG 123
+N K + +Q +PG +++ LD G QG H D HG
Sbjct: 7 INIKKDFTIQQKIDPGKVQIIVLD---GNQGTAHVLDAPEHG 45
>sp|P03775|V03_BPT7 GENE 0.3 PROTEIN.
Length = 117
Score = 72 (30.4 bits), Expect = 0.44, P = 0.36
Identities = 21/82 (25%), Positives = 36/82 (43%)
Query: 178 LRDTGIFLDLMHLKKPGGFDVSVFYRDIITTAEDEDLGVHFEESSKLEDLLRKVRAKETK 237
+RDT D +H+ V +Y DI + E + + FE+S + D +R +
Sbjct: 28 IRDTDDLHDAIHMAADNA--VPHYYADIFSVMASEGIDLEFEDSGLMPDTKDVIRILQA- 84
Query: 238 KRVLSRLKFKLGEDVVLMVGIY 259
R+ +L L ED ++ Y
Sbjct: 85 -RIYEQLTIDLWEDAEDLLNEY 105
>sp|Q03673|YMO3_YEAST HYPOTHETICAL 22.7 KD PROTEIN IN CDC5-MVP1 INTERGENIC
REGION.
Length = 198
Score = 78 (32.5 bits), Expect = 0.48, P = 0.38
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 560 KLTVPTLKDICKAHGLKSGPKKQELLDALIRH 591
K TV LK+ CK+ GLK +K +LL LI H
Sbjct: 71 KFTVKVLKEQCKSRGLKLSGRKSDLLQRLITH 102
>sp|P37899|HS70_PYRSA HEAT SHOCK 70 KD PROTEIN.
Length = 649
Score = 84 (34.6 bits), Expect = 0.64, P = 0.47
Identities = 27/125 (21%), Positives = 57/125 (45%)
Query: 428 KRKVPFTEKVTANQEQIDK-------MKAIVQNVRFTYRSDSFENPVLQQHFRNLEALAL 480
+R V EK E++DK ++ N+R T R + + + ++ +++E
Sbjct: 522 ERMVEEAEKYKTEDEKLDKKLEAKNSLENYAYNIRNTVRDEKLKEKIQEEDKKSIEEKVK 581
Query: 481 DMMES-EQVVDLTLPKVEAIKKRLGSLADEFKELVYPPGYNPE-GKVAKRKQDDEGSTSK 538
+++E E DL + E +K L + A+ +Y G P+ G + + + + + +
Sbjct: 582 EVLEFIETNEDLEKEEYEEKEKELKNFANPIISKLYQQGSVPDMGNFSTGQNEQDDNANM 641
Query: 539 KPKVE 543
PK+E
Sbjct: 642 GPKIE 646
>sp|Q10369|YDBJ_SCHPO HYPOTHETICAL PROTEIN C22E12.19 IN CHROMOSOME I
(FRAGMENT).
Length = 230
Score = 77 (32.2 bits), Expect = 0.84, P = 0.57
Identities = 33/172 (19%), Positives = 76/172 (44%)
Query: 389 KNVSPYFVALVPQEEELDDQNIQVTPGGFQLVFLPYADDKRKVPFTEKVTANQEQIDKMK 448
+N+S Y + L+P E + D N + + + P +K T+ + +Q+ +
Sbjct: 16 RNMSRYTLGLLPSEPPVGDMNNEDSDTNTSITQSPTNSEK----LTDILQESQDTKALQE 71
Query: 449 AIVQNVRFTYRSDSFENPVLQQHFRNLEALALDMMESEQVVDLTLPKVEAIKKRLGSLAD 508
+QN+ ++ F+N V F NL + + +V + + + K++ L
Sbjct: 72 KYLQNIYALTQNQLFKN-VEDYSFYNLNREKFQR-DKQTIVGVMRKRRHVLNKKIKRLQS 129
Query: 509 EFKELVYPPGYNPEGKVAKRKQDDEGSTSKK--PKVELSEEELKAHFRKGTL 558
+K+++ N +V + + D+ +KK P ++ S ++ ++F G +
Sbjct: 130 HWKQVLGRWEENI-ARVDRLTEIDKTKNAKKSEPFIKRSTRKVMSNFTAGDI 180
>sp|P46211|EFG_AQUPY ELONGATION FACTOR G (EF-G).
Length = 700
Score = 83 (34.3 bits), Expect = 0.90, P = 0.59
Identities = 33/111 (29%), Positives = 53/111 (47%)
Query: 486 EQVVDLTLPKVEAIKKRLGSLADEFKELVYPPGYNPEGKVAKRKQ-------DDEGSTSK 538
E V+DL +++AI+ +L +++ + PPGY + + + K DDE
Sbjct: 176 EGVIDLM--EMKAIRWLEVTLGAKYEVIDIPPGYQEKAQEWREKMIETIVETDDELMEKY 233
Query: 539 KPKVELSEEELKAHFRKGTLGKLTVPTLKDICKAHGLKSGPKKQELLDALI 589
E++ EEL+ RK T+ + VP L C + G Q LLDA+I
Sbjct: 234 LEAQEITLEELRKALRKATINRQLVPVL---CGSAFKNKGV--QPLLDAVI 279
>sp|P21169|DCOR_ECOLI ORNITHINE DECARBOXYLASE, CONSTITUTIVE (EC 4.1.1.17).
Length = 731
Score = 79 (32.9 bits), Expect = 2.6, P = 0.92
Identities = 21/70 (30%), Positives = 32/70 (45%)
Query: 92 DLDNPGAKRVLELDQFKGQ-QGKKHFRDTVGHGSDYSLSEVLWVCANLFSDVQLKMSHKR 150
DL P +++L + G + DTVGH DY L + WV F + +
Sbjct: 290 DLPRPYRLAIIQLGTYDGTVYNARQVIDTVGHLCDYILFDSAWVGYEQF--IPMMADSSP 347
Query: 151 IMLFTNEDDP 160
++L NE+DP
Sbjct: 348 LLLELNENDP 357
>sp|P50519|HSP9_SCHPO HEAT SHOCK PROTEIN HSP9.
Length = 68
Score = 51 (23.0 bits), Expect = 4.1, P = 0.98
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 28 DASRAMFESQGEDELTPFDMSIQCIQSVYTSKIISSDRDLLAVVFYGTEKDKNS 81
D +R F QG++++TP D S + S I+ D +A F E DK++
Sbjct: 3 DPARKSFTEQGKEKMTP-DSSKSTLDKAKES--ITGAYDKVASAFTSDE-DKST 52
>sp|P48780|RS15_MYCFL 30S RIBOSOMAL PROTEIN S15.
Length = 88
Score = 59 (25.8 bits), Expect = 4.6, P = 0.99
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 197 DVSVFYRDIITTAED-EDLGVHFEESSKLEDLLRKVRAKETK-KRVLSRLKFK 247
D+SV I ED E L +HFE++ K + +R AK K K++L+ LK K
Sbjct: 23 DISV---QIALLPEDIEKLKLHFEKNKKDKHSMRGFIAKVNKRKKLLNYLKEK 72
>sp|Q09088|OSA6_BORBU OUTER SURFACE PROTEIN A PRECURSOR.
Length = 273
Score = 71 (30.1 bits), Expect = 5.2, P = 0.99
Identities = 35/123 (28%), Positives = 56/123 (45%)
Query: 219 EESSKLEDLLRKVRAKETKKRVLSR--LKFKLGED-VVLMV--GIYNLVQKANKPFPVRL 273
E +KLE K K VL L+ K+ D V L V G L ++ K V +
Sbjct: 140 ENGTKLEYTEMKSDGTGKAKEVLKNFTLEGKVANDKVTLEVKEGTVTLSKEIAKSGEVTV 199
Query: 274 -YRETNEPVKTK-TRTFNVNTGSLLLPSDTKRSLTYGTRQIVLEKEETEELKRFDEPGLI 331
+TN TK T ++ T +L + ++K+ T Q+V K++T ++++D G
Sbjct: 200 ALNDTNTTQATKKTGAWDSKTSTLTISVNSKK-----TTQLVFTKQDTITVQKYDSAGTN 254
Query: 332 LMG 334
L G
Sbjct: 255 LEG 257
>sp|P19494|LRP_ECOLI LEUCINE-RESPONSIVE REGULATORY PROTEIN.
Length = 164
Score = 67 (28.6 bits), Expect = 5.8, P = 1.0
Identities = 34/129 (26%), Positives = 55/129 (42%)
Query: 320 EELKRFDEPGLILMGFKPTVMLKKQHYLRPSLFVYPEESLVSGSSTLFSALLTKCVEKKV 379
E ++R + G I G+ T +L HYL SL V+ E +L G+ +F T + +
Sbjct: 47 ERVRRLERQGFI-QGY--TALLNP-HYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEE 102
Query: 380 IAVCRYTHRKNVSPYFVALVPQEEELDDQNIQVTPGGFQLVFLPYADDKRKVPFTEKVTA 439
I C VS F L+ + + D + G L+ LP +D R E+V
Sbjct: 103 IQECHL-----VSGDFDYLL--KTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQ 155
Query: 440 NQEQIDKMK 448
+ + K +
Sbjct: 156 SNRLVIKTR 164
>sp|P37425|LRP_SERMA LEUCINE-RESPONSIVE REGULATORY PROTEIN.
Length = 164
Score = 67 (28.6 bits), Expect = 5.8, P = 1.0
Identities = 34/129 (26%), Positives = 55/129 (42%)
Query: 320 EELKRFDEPGLILMGFKPTVMLKKQHYLRPSLFVYPEESLVSGSSTLFSALLTKCVEKKV 379
E ++R + G I G+ T +L HYL SL V+ E +L G+ +F T + +
Sbjct: 47 ERVRRLERQGFI-QGY--TALLNP-HYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEE 102
Query: 380 IAVCRYTHRKNVSPYFVALVPQEEELDDQNIQVTPGGFQLVFLPYADDKRKVPFTEKVTA 439
I C VS F L+ + + D + G L+ LP +D R E+V
Sbjct: 103 IQECHL-----VSGDFDYLL--KTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQ 155
Query: 440 NQEQIDKMK 448
+ + K +
Sbjct: 156 SNRLVIKTR 164
>sp|P49792|N358_HUMAN NUCLEAR PORE COMPLEX PROTEIN NUP358 (NUCLEOPORIN NUP358)
(358 KD NUCLEOPORIN) (P270).
Length = 3224
Score = 82 (33.9 bits), Expect = 6.1, P = 1.0
Identities = 36/183 (19%), Positives = 77/183 (42%)
Query: 381 AVCRYTHRKNVSPYFVAL-VPQEEELDDQNIQVTPGGFQLVFLPYADDKRKV-----PFT 434
AVC HRK V L + + E++ Q G + + +A+ +K F
Sbjct: 534 AVCTLIHRKAVPGNVAKLRLLVQHEINTLRAQEKHGLQPALLVHWAECLQKTGSGLNSFY 593
Query: 435 EKVTANQEQIDKMKAIVQNVRFTYRSDSFENPV--LQQHFRNLEALALDMMESEQVVDLT 492
++ + K ++ ++ + +S P+ L +HF +++ A +++E E+ +T
Sbjct: 594 DQREYIGRSVHYWKKVLPLLKIIKKKNSIPEPIDPLFKHFHSVDIQASEIVEYEEDAHIT 653
Query: 493 LPKVEAIKKRLGSLADEFKELVYPPGYNPEGKVAKRKQDDEGSTSKKPKVELSEEELKAH 552
++A+ + F+ + Y + RK +D + + P+ +EE K +
Sbjct: 654 FAILDAVNGNIEDAVTAFESIKSVVSYWNLALIFHRKAEDIENDALSPE---EQEECKNY 710
Query: 553 FRK 555
RK
Sbjct: 711 LRK 713
>sp|P11778|MYSB_PAPHA MYOSIN HEAVY CHAIN, CARDIAC MUSCLE BETA ISOFORM
(FRAGMENT).
Length = 244
Score = 69 (29.3 bits), Expect = 7.3, P = 1.0
Identities = 35/131 (26%), Positives = 58/131 (44%)
Query: 442 EQIDKMKAIVQNVRFTYRSDSFENPVLQQHFRNLEALALDMMESEQ-VVDLTLPKVEAIK 500
EQI Q + R EN + + RN E++ M +SE+ + +LT E K
Sbjct: 110 EQIALKGGKKQLQKLEARVRELENELEAEQKRNAESVK-GMRKSERRIKELTYQTEEDRK 168
Query: 501 K--RLGSLADEFKELVYPPGYNPEGKVAKRKQDDEGSTSKKPKVELSEEELKAHFRKGTL 558
RL L D+ + V Y + + A+ + + S +K + EL E E +A + +
Sbjct: 169 NLLRLQDLVDKLQLKV--KAYKRQAEEAEEQANTNLSKFRKVQHELDEAEERADIAESQV 226
Query: 559 GKLTVPTLKDI 569
KL + +DI
Sbjct: 227 NKLRAKS-RDI 236
>sp|P38525|EFG_THEMA ELONGATION FACTOR G (EF-G).
Length = 682
Score = 74 (31.1 bits), Expect = 8.2, P = 1.0
Identities = 22/50 (44%), Positives = 28/50 (56%)
Query: 543 ELSEEELKAHFRKGTLGKLTVPTLKDICKAHGLKSGPKKQELLDALIRHL 592
E+SEEE+K RK T+ VP L C A K+ Q LLDA+I +L
Sbjct: 238 EISEEEIKRVLRKATIENKAVPVL---CGA--AKANKGIQPLLDAVIDYL 282
>sp|P41960|RL26_BRUPA 60S RIBOSOMAL PROTEIN L26 (FRAGMENT).
Length = 60
Score = 48 (22.0 bits), Expect = 8.6, P = 1.0
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 529 KQDDEGSTSKKPKVELSEEELKAHFRKGTLGKLTVPTLKDICKAHGLKSGP 579
KQ+ S+S + K + +H R+ + + P+ KD+ HG++S P
Sbjct: 2 KQNQFVSSSAR-KARKAPFNAPSHIRRKLM---SAPSTKDLRNKHGIRSIP 48
>sp|P03546|VMP_CAMVC MOVEMENT PROTEIN (CELL-TO-CELL TRANSPORT PROTEIN).
Length = 327
Score = 70 (29.7 bits), Expect = 8.8, P = 1.0
Identities = 28/118 (23%), Positives = 59/118 (50%)
Query: 401 QEEELDDQNIQV----TPGGFQLVFLPYADDKRKVPFTEKVTANQEQIDKMKAIVQNVRF 456
++ + + N+Q+ GF + D + + T+ +T +E+I KM ++ V
Sbjct: 12 EQSQNSENNMQIFKSENSDGFSSDLMISNDQLKNISKTQ-LTLEKEKIFKMPNVLSQVM- 69
Query: 457 TYRSDSFENPVLQQHFRNLEALALDMMESEQVVDLTLPKVEAIKKRLGSLADEFKELV 514
++ S +N +L + + + L++D+ ++ V L L E I KRL SL E ++++
Sbjct: 70 -KKAFSRKNEIL--YCVSTKELSVDIHDATGKVYLPLITREEINKRLSSLKPEVRKIM 124
>sp|P03547|VMP_CAMVD MOVEMENT PROTEIN (CELL-TO-CELL TRANSPORT PROTEIN).
Length = 327
Score = 70 (29.7 bits), Expect = 8.8, P = 1.0
Identities = 30/115 (26%), Positives = 58/115 (50%)
Query: 401 QEEELDDQNIQV----TPGGFQLVFLPYADDKRKVPFTEKVTANQEQIDKMKAIVQNVRF 456
++ + + N+Q+ T GF L ++D+ K ++T +E+I KM ++ V
Sbjct: 12 EQSQNSENNMQIFKSETSDGFSSD-LKISNDQLKNISKTQLTLEKEKIFKMPNVLSQVM- 69
Query: 457 TYRSDSFENPVLQQHFRNLEALALDMMESEQVVDLTLPKVEAIKKRLGSLADEFK 511
++ S +N +L + + + L++D+ ++ V L L E I KRL SL E +
Sbjct: 70 -KKAFSRKNEIL--YCVSTKELSVDIHDATGKVYLPLITKEEINKRLSSLKPEVR 121
>sp|Q02968|VMP_CAMVE MOVEMENT PROTEIN (CELL-TO-CELL TRANSPORT PROTEIN).
Length = 327
Score = 70 (29.7 bits), Expect = 8.8, P = 1.0
Identities = 29/116 (25%), Positives = 57/116 (49%)
Query: 401 QEEELDDQNIQV----TPGGFQLVFLPYADDKRKVPFTEKVTANQEQIDKMKAIVQNVRF 456
++ + + N+Q+ GF + D + + T+ +T +E+I KM ++ V
Sbjct: 12 EQSQNSENNMQIFKSENSDGFSSDLMISNDQLKNISKTQ-LTLEKEKIFKMPNVLSQVM- 69
Query: 457 TYRSDSFENPVLQQHFRNLEALALDMMESEQVVDLTLPKVEAIKKRLGSLADEFKE 512
R+ S +N +L + + + L++D+ ++ V L L E I KRL SL E ++
Sbjct: 70 -KRAFSRKNEIL--YCVSTKELSVDIHDATGKVYLPLITREEINKRLSSLKPEVRK 122
Parameters:
cpus=1
filter=seg
kap
postsw
ctxfactor=1.00
E=10
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.136 0.382 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 595 595 10. 75 3 11 22 0.21 34
36 0.22 37
Statistics:
Database: /am/db/blast/sp35
Title: SWISS-PROT Release 35.0
Released: November 30, 1997
Posted: 2:27:45 PM CST Dec 15, 1997
Format: BLAST-1.4
# of letters in database: 25,083,768
# of sequences in database: 69,113
# of database sequences satisfying E: 25
No. of states in DFA: 561 (55 KB)
Total size of DFA: 169 KB (192 KB)
Time to generate neighborhood: 0.01u 0.02s 0.03t Elapsed: 00:00:00
No. of threads or processors used: 1
Search cpu time: 26.63u 0.27s 26.90t Elapsed: 00:00:31
Total cpu time: 26.73u 0.33s 27.06t Elapsed: 00:00:32
Start: Wed Sep 20 17:47:25 2000 End: Wed Sep 20 17:47:57 2000
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