BLASTP 2.0MP-WashU [04-Sep-2000]
Copyright (C) 1996-2000 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2000) http://blast.wustl.edu
Query= gi|125730|sp|P23475|KU70_MOUSE ATP-DEPENDENT DNA HELICASE II, 70 KD
SUBUNIT HOMOLOG (LUPUS KU AUTOANTIGEN PROTEIN P70) (70 KD SUBUNIT OF KU
ANTIGEN) (THYROID-LUPUS AUTOANTIGEN) (TLAA) (CTC BOX BINDING FACTOR 75 KD
SUBUNIT) (CTCBF) (CTC75).>gi|198637 (M38700) p70 Ku lupus autoantigen [Mus
musculus]
(595 letters)
Database: SWISS-PROT Release 35.0
69,113 sequences; 25,083,768 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
sp|P23475|KU70_MOUSE ATP-DEPENDENT DNA HELICASE II, 70 KD... 2934 1.7e-306 1
sp|P12956|KU70_HUMAN ATP-DEPENDENT DNA HELICASE II, 70 KD... 2473 1.2e-257 1
sp|P32807|HDF1_YEAST HIGH AFFINITY DNA-BINDING FACTOR SUB... 221 1.3e-15 1
sp|Q04437|HDF2_YEAST HIGH AFFINITY DNA-BINDING FACTOR SUB... 112 7.6e-05 2
sp|P27641|KU86_MOUSE ATP-DEPENDENT DNA HELICASE II, 86 KD... 109 9.0e-05 2
sp|P13010|KU86_HUMAN ATP-DEPENDENT DNA HELICASE II, 86 KD... 104 0.010 1
sp|P45912|YQAO_BACSU HYPOTHETICAL 7.6 KD PROTEIN IN SPOII... 64 0.28 1
sp|P03775|V03_BPT7 GENE 0.3 PROTEIN. 72 0.58 1
sp|Q03673|YMO3_YEAST HYPOTHETICAL 22.7 KD PROTEIN IN CDC5... 78 0.62 1
sp|Q10369|YDBJ_SCHPO HYPOTHETICAL PROTEIN C22E12.19 IN CH... 77 0.81 1
sp|P46211|EFG_AQUPY ELONGATION FACTOR G (EF-G). 83 0.83 1
sp|P32341|VM12_YEAST VACUOLAR ATPASE ASSEMBLY INTEGRAL ME... 64 0.99 2
sp|P09847|RPA2_METTH DNA-DIRECTED RNA POLYMERASE SUBUNIT ... 64 0.991 2
sp|Q49419|Y328_MYCGE HYPOTHETICAL PROTEIN MG328. 64 0.993 3
sp|P21169|DCOR_ECOLI ORNITHINE DECARBOXYLASE, CONSTITUTIV... 79 0.994 1
sp|P50519|HSP9_SCHPO HEAT SHOCK PROTEIN HSP9. 51 0.9997 1
sp|P48780|RS15_MYCFL 30S RIBOSOMAL PROTEIN S15. 59 0.9999 1
>sp|P23475|KU70_MOUSE ATP-DEPENDENT DNA HELICASE II, 70 KD SUBUNIT (KU70) (CTC
BOX BINDING FACTOR 75 KD SUBUNIT) (CTCBF) (CTC75) (FRAGMENT).
Length = 595
Score = 2934 (1037.9 bits), Expect = 1.7e-306, P = 1.7e-306
Identities = 573/588 (97%), Positives = 573/588 (97%)
Query: 8 SPDTGGEYKYSGRDSLIFLVDASRAMFESQGEDELTPFDMSIQCIQSVYTSKIISSDRDL 67
SPDTGGEYKYSGRDSLIFLVDASRAMFESQGEDELTPFDMSIQCIQSVYTSKIISSDRDL
Sbjct: 8 SPDTGGEYKYSGRDSLIFLVDASRAMFESQGEDELTPFDMSIQCIQSVYTSKIISSDRDL 67
Query: 68 LAVVFYGTEKDKNSVNFKNIYVLQDLDNPGAKRVLELDQFKGQQGKKHFRDTVGHGSDYS 127
LAVVFYGTEKDKNSVNFKNIYVLQDLDNPGAKRVLELDQFKGQQGKKHFRDTVGHGSDYS
Sbjct: 68 LAVVFYGTEKDKNSVNFKNIYVLQDLDNPGAKRVLELDQFKGQQGKKHFRDTVGHGSDYS 127
Query: 128 LSEVLWVCANLFSDVQLKMSHKRIMLFTNEDDPHGXXXXXXXXXXXXXXXLRDTGIFLDL 187
LSEVLWVCANLFSDVQLKMSHKRIMLFTNEDDPHG LRDTGIFLDL
Sbjct: 128 LSEVLWVCANLFSDVQLKMSHKRIMLFTNEDDPHGRDSAKASRARTKASDLRDTGIFLDL 187
Query: 188 MHLKKPGGFDVSVFYRDIITTAEDEDLGVHFEESSKLEDLLRKVRAKETKKRVLSRLKFK 247
MHLKKPGGFDVSVFYRDIITTAEDEDLGVHFEESSKLEDLLRKVRAKETKKRVLSRLKFK
Sbjct: 188 MHLKKPGGFDVSVFYRDIITTAEDEDLGVHFEESSKLEDLLRKVRAKETKKRVLSRLKFK 247
Query: 248 LGEDVVLMVGIYNLVQKANKPFPVRLYRETNEPVKTKTRTFNVNTGSLLLPSDTKRSLTY 307
LGEDVVLMVGIYNLVQKANKPFPVRLYRETNEPVKTKTRTFNVNTGSLLLPSDTKRSLTY
Sbjct: 248 LGEDVVLMVGIYNLVQKANKPFPVRLYRETNEPVKTKTRTFNVNTGSLLLPSDTKRSLTY 307
Query: 308 GTRQIVLEKEETEELKRFDEPGLILMGFKPTVMLKKQHYLRPSLFVYPEESLVSGSSTLF 367
GTRQIVLEKEETEELKRFDEPGLILMGFKPTVMLKKQHYLRPSLFVYPEESLVSGSSTLF
Sbjct: 308 GTRQIVLEKEETEELKRFDEPGLILMGFKPTVMLKKQHYLRPSLFVYPEESLVSGSSTLF 367
Query: 368 SALLTKCVEKKVIAVCRYTHRKNVSPYFVALVPQEEELDDQNIQVTPGGFQLVFLPYADD 427
SALLTKCVEKKVIAVCRYTHRKNVSPYFVALVPQEEELDDQNIQVTPGGFQLVFLPYADD
Sbjct: 368 SALLTKCVEKKVIAVCRYTHRKNVSPYFVALVPQEEELDDQNIQVTPGGFQLVFLPYADD 427
Query: 428 KRKVPFTEKVTANQEQIDKMKAIVQNVRFTYRSDSFENPVLQQHFRNLEALALDMMESEQ 487
KRKVPFTEKVTANQEQIDKMKAIVQNVRFTYRSDSFENPVLQQHFRNLEALALDMMESEQ
Sbjct: 428 KRKVPFTEKVTANQEQIDKMKAIVQNVRFTYRSDSFENPVLQQHFRNLEALALDMMESEQ 487
Query: 488 VVDLTLPKVEAIKKRLGSLADEFKELVYPPGYNPEGKVAKRKQDDEGSTSKKPKVELSEE 547
VVDLTLPKVEAIKKRLGSLADEFKELVYPPGYNPEGKVAKRKQDDEGSTSKKPKVELSEE
Sbjct: 488 VVDLTLPKVEAIKKRLGSLADEFKELVYPPGYNPEGKVAKRKQDDEGSTSKKPKVELSEE 547
Query: 548 ELKAHFRKGTLGKLTVPTLKDICKAHGLKSGPKKQELLDALIRHLEKN 595
ELKAHFRKGTLGKLTVPTLKDICKAHGLKSGPKKQELLDALIRHLEKN
Sbjct: 548 ELKAHFRKGTLGKLTVPTLKDICKAHGLKSGPKKQELLDALIRHLEKN 595
>sp|P12956|KU70_HUMAN ATP-DEPENDENT DNA HELICASE II, 70 KD SUBUNIT (LUPUS KU
AUTOANTIGEN PROTEIN P70) (70 KD SUBUNIT OF KU ANTIGEN)
(THYROID-LUPUS AUTOANTIGEN) (TLAA) (KU70) (CTC BOX BINDING FACTOR
75 KD SUBUNIT) (CTCBF) (CTC75).
Length = 608
Score = 2473 (875.6 bits), Expect = 1.2e-257, P = 1.2e-257
Identities = 473/584 (80%), Positives = 518/584 (88%)
Query: 10 DTGGEYKYSGRDSLIFLVDASRAMFESQGEDELTPFDMSIQCIQSVYTSKIISSDRDLLA 69
+ G+YKYSGRDSLIFLVDAS+AMFESQ EDELTPFDMSIQCIQSVY SKIISSDRDLLA
Sbjct: 24 EASGDYKYSGRDSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLA 83
Query: 70 VVFYGTEKDKNSVNFKNIYVLQDLDNPGAKRVLELDQFKGQQGKKHFRDTVGHGSDYSLS 129
VVFYGTEKDKNSVNFKNIYVLQ+LDNPGAKR+LELDQFKGQQG+K F+D +GHGSDYSLS
Sbjct: 84 VVFYGTEKDKNSVNFKNIYVLQELDNPGAKRILELDQFKGQQGQKRFQDMMGHGSDYSLS 143
Query: 130 EVLWVCANLFSDVQLKMSHKRIMLFTNEDDPHGXXXXXXXXXXXXXXXLRDTGIFLDLMH 189
EVLWVCANLFSDVQ KMSHKRIMLFTNED+PHG LRDTGIFLDLMH
Sbjct: 144 EVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDLMH 203
Query: 190 LKKPGGFDVSVFYRDIITTAEDEDLGVHFEESSKLEDLLRKVRAKETKKRVLSRLKFKLG 249
LKKPGGFD+S+FYRDII+ AEDEDL VHFEESSKLEDLLRKVRAKET+KR LSRLK KL
Sbjct: 204 LKKPGGFDISLFYRDIISIAEDEDLRVHFEESSKLEDLLRKVRAKETRKRALSRLKLKLN 263
Query: 250 EDVVLMVGIYNLVQKANKPFPVRLYRETNEPVKTKTRTFNVNTGSLLLPSDTKRSLTYGT 309
+D+V+ VGIYNLVQKA KP P++LYRETNEPVKTKTRTFN +TG LLLPSDTKRS YG+
Sbjct: 264 KDIVISVGIYNLVQKALKPPPIKLYRETNEPVKTKTRTFNTSTGGLLLPSDTKRSQIYGS 323
Query: 310 RQIVLEKEETEELKRFDEPGLILMGFKPTVMLKKQHYLRPSLFVYPEESLVSGSSTLFSA 369
RQI+LEKEETEELKRFD+PGL+LMGFKP V+LKK HYLRPSLFVYPEESLV GSSTLFSA
Sbjct: 324 RQIILEKEETEELKRFDDPGLMLMGFKPLVLLKKHHYLRPSLFVYPEESLVIGSSTLFSA 383
Query: 370 LLTKCVEKKVIAVCRYTHRKNVSPYFVALVPQEEELDDQNIQVTPGGFQLVFLPYADDKR 429
LL KC+EK+V A+CRYT R+N+ PYFVALVPQEEELDDQ IQVTP GFQLVFLP+ADDKR
Sbjct: 384 LLIKCLEKEVAALCRYTPRRNIPPYFVALVPQEEELDDQKIQVTPPGFQLVFLPFADDKR 443
Query: 430 KVPFTEKVTANQEQIDKMKAIVQNVRFTYRSDSFENPVLQQHFRNLEALALDMMESEQVV 489
K+PFTEK+ A EQ+ KMKAIV+ +RFTYRSDSFENPVLQQHFRNLEALALD+ME EQ V
Sbjct: 444 KMPFTEKIMATPEQVGKMKAIVEKLRFTYRSDSFENPVLQQHFRNLEALALDLMEPEQAV 503
Query: 490 DLTLPKVEAIKKRLGSLADEFKELVYPPGYNPEGKVAKRKQDDEGSTSKKPKVELSEEEL 549
DLTLPKVEA+ KRLGSL DEFKELVYPP YNPEGKV KRK D+EGS SK+PKVE SEEEL
Sbjct: 504 DLTLPKVEAMNKRLGSLVDEFKELVYPPDYNPEGKVTKRKHDNEGSGSKRPKVEYSEEEL 563
Query: 550 KAHFRKGTLGKLTVPTLKDICKAHGLKSGPKKQELLDALIRHLE 593
K H KGTLGK TVP LK+ C+A+GLKSG KKQELL+AL +H +
Sbjct: 564 KTHISKGTLGKFTVPMLKEACRAYGLKSGLKKQELLEALTKHFQ 607
>sp|P32807|HDF1_YEAST HIGH AFFINITY DNA-BINDING FACTOR SUBUNIT 1 (KU70
HOMOLOG).
Length = 602
Score = 221 (82.9 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 126/549 (22%), Positives = 225/549 (40%)
Query: 10 DTGGEYKYSGRDSLIFLVDASRAMFESQGEDEL-TPFDMSIQCIQSVYTSKIISSDRDLL 68
D G K+ + ++F ++ S MF+ + E +P ++ + + + +I+ +
Sbjct: 19 DETGYRKFDIHEGILFCIELSETMFKESSDLEYKSPLLEILESLDELMSQLVITRPGTAI 78
Query: 69 AVVFYGTEKDKNSVNFKNIYVLQDLDNPGAKRVLEL--DQFKGQQGKKH---FRDTVGHG 123
FY ++ ++ L+D++ K++ +L D G+ F+ T G
Sbjct: 79 GCYFYYCNREDAKEGIYELFPLRDINATFMKKLNDLLEDLSSGRISLYDYFMFQQT-GSE 137
Query: 124 SDYSLSEVLWVCANLFSDV---QLKMSHKRIMLFTNEDDPH-GXXXXXXXXXXXXXXXLR 179
LS + + F + Q ++S+KR+ LFT+ D P L
Sbjct: 138 KQVRLSVLFTFMLDTFLEEIPGQKQLSNKRVFLFTDIDKPQEAQDIDERARLRRLTIDLF 197
Query: 180 DTGI-FLDLM--HLKKPGGFDVSVFYRDIIT----TAEDEDLGVHFE-ESSKLEDLLRKV 231
D + F + KP FD + FY DI+ T E+ L F+ S+K D + +
Sbjct: 198 DNKVNFATFFIGYADKP--FD-NEFYSDILQLGSHTNENTGLDSEFDGPSTKPIDA-KYI 253
Query: 232 RAKETKKRVLSRLKFK----LGEDVVLMVGI--YNLV--QKANKPFP-VRLYRETNEPVK 282
+++ +K+ + R+ F+ L E +VG+ Y + +KA + V + + +
Sbjct: 254 KSRILRKKEVKRIMFQCPLILDEKTNFIVGVKGYTMYTHEKAGVRYKLVYEHEDIRQEAY 313
Query: 283 TKTRTFNVNTGSLLLPSDTKRSLTYGTRQIVLEKEETE-ELKRFDEPGLIL--MGFKPTV 339
+K + N TG + T + YG I L + + ++ + + L +GF+ +
Sbjct: 314 SKRKFLNPITGEDVT-GKTVKVYPYGDLDINLSDSQDQIVMEAYTQKDAFLKIIGFRSSS 372
Query: 340 MLKKQHYLR---PSLFVYPEESLVSGSSTLFSALLTKCVEKKVIAVCRYTHRKNVSPYFV 396
K HY S F+ P+E+ GS ++LL +K IA+ + N P
Sbjct: 373 --KSIHYFNNIDKSSFIVPDEAKYEGSIRTLASLLKILRKKDKIAILWGKLKSNSHPSLY 430
Query: 397 ALVPQEEELDDQNIQVTPGGFQLVFLPYADDKRKVPFTEKVTANQEQ---IDKMKAIVQ- 452
L P + D N GF L +P+ D+ RK P E D MK + Q
Sbjct: 431 TLSPSS--VKDYN-----EGFYLYRVPFLDEIRKFPSLLSYDDGSEHKLDYDNMKKVTQS 483
Query: 453 -----NVRFTYRSDSFENPVLQQHFRNLEALALDMMESEQVVDLT-LPKVEAIKKRLGSL 506
N+R Y F+NP+LQ+H++ L L + E D P + K R+
Sbjct: 484 IMGYFNLRDGYNPSDFKNPLLQKHYKVLHDYLLQI---ETTFDENETPNTK--KDRMMRE 538
Query: 507 ADEFKELVY 515
D ++L Y
Sbjct: 539 DDSLRKLYY 547
>sp|Q04437|HDF2_YEAST HIGH AFFINITY DNA-BINDING FACTOR SUBUNIT 2 (KU80
HOMOLOG).
Length = 629
Score = 112 (44.5 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 49/167 (29%), Positives = 73/167 (43%)
Query: 274 YRETNEPVKTKTRTFNVNTGSLLLP-SDTKRSLT----YGTRQIVLEKEETEELKRFDEP 328
Y NE K K + + +GS +P + +K S+T YG +VL ++ P
Sbjct: 282 YEIHNEGNK-KNVSEDDQSGSSYIPVTISKDSVTKAYRYGADYVVLPSVLVDQTVYESFP 340
Query: 329 GLILMGFKPTVMLKKQHYLRPSLFVYPEESLVSGSSTL-FSALLTKCVEKKVIAVCRYTH 387
GL L GF L + S F+ + L S + FSAL+ +E + IAV RY
Sbjct: 341 GLDLRGFLNREALPRYFLTSESSFITADTRLGCQSDLMAFSALVDVMLENRKIAVARYVS 400
Query: 388 RKNVSPYFVALVPQEEELDDQNIQVT-PGGFQLVFLPYADDKRKVPF 433
+K+ AL P E + N + L LP+A+D+R F
Sbjct: 401 KKDSEVNMCALCPVLIEHSNINSEKKFVKSLTLCRLPFAEDERVTDF 447
Score = 57 (25.1 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 30/143 (20%), Positives = 60/143 (41%)
Query: 21 DSLIFLVDASRAMFESQGEDELTPFDMSIQCIQSVYTSKIISSDR-DLLAVVFYGTEKDK 79
+S F+VD S +M ++ + S+ ++ +K S + D ++ +
Sbjct: 4 ESTTFIVDVSPSMMKNNNVSK------SMAYLEYTLLNKSKKSRKTDWISCYLANCPVSE 57
Query: 80 NSVNFKNIYVLQDLDNP--GAKRVLELDQFKGQQGKKHFRDTVGHGSDYSLSEVLWVCAN 137
NS N++ +Q P + + + K Q +H D+ G + +L V +
Sbjct: 58 NSQEIPNVFQIQSFLAPVTTTATIGFIKRLK-QYCDQHSHDSSNEGLQSMIQCLLVVSLD 116
Query: 138 LFSDVQLKMSHKRIMLFT-NEDD 159
+ Q + K+I++FT N DD
Sbjct: 117 IKQQFQARKILKQIVVFTDNLDD 139
>sp|P27641|KU86_MOUSE ATP-DEPENDENT DNA HELICASE II, 86 KD SUBUNIT (LUPUS KU
AUTOANTIGEN PROTEIN P86) (86 KD SUBUNIT OF KU ANTIGEN)
(THYROID-LUPUS AUTOANTIGEN) (TLAA) (CTC BOX BINDING FACTOR 85 KD
SUBUNIT) (CTCBF) (CTC85) (NUCLEAR FACTOR IV) (KU80).
Length = 732
Score = 109 (43.4 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 80/386 (20%), Positives = 173/386 (44%)
Query: 205 IITTAEDEDLGVHFEESSKLEDLLRKVRA-KETKKRVLS-RLKFKLGEDVVLMVGIY-NL 261
++ + E ED G+ +E + LR++ K+ ++R + + +G ++ + + Y ++
Sbjct: 211 VMLSLEGED-GL--DEIYSFSESLRQLCVFKKIERRSMPWPCQLTIGPNLSIKIVAYKSI 267
Query: 262 VQKANKPFPVRLYRET--NEPVKTKT-RTFNVNTGSLLLPSDTKRSLTYGTRQIVLEKEE 318
VQ+ K V + T E ++ +T N + + + DT + YG+ I K +
Sbjct: 268 VQEKFKKSWVVVDARTLKKEDIQKETVYCLNDDDETEVSKEDTIQGYRYGSDIIPFSKVD 327
Query: 319 TEELKRFDEPGLI-LMGFKPTVMLKKQHYL-RPSLFVYPEESLVSGSSTLFSALLTKCVE 376
E++K E ++GF + + ++ ++ L V+ + + + L S+L+ E
Sbjct: 328 EEQMKYKSEGKCFSVLGFCKSSQVHRRFFMGHQVLKVFAAKDDEAAAVAL-SSLVHALDE 386
Query: 377 KKVIAVCRYTHRKNVSPYF--VALVPQE--EELDDQNIQVTPGGFQLVFLPYADDKRKVP 432
++A+ RY + K +P +L ++ E L + Q +F ++K+ P
Sbjct: 387 LNMVAIVRYAYDKRSNPQVGVASLYIKDAYERLVYVQLPFMEDLRQYMFSSLKNNKKCTP 446
Query: 433 FTEKVTANQEQIDKMKAIVQN-----VRFTYRSDSFENPVLQQHFRNLEALALDMME--- 484
+++A + ID M + +N V + + NP Q+ ++ L AL + E
Sbjct: 447 TEAQLSAIDDLIDSMSLVKKNEEEDIVEDLFPASKIPNPEFQRLYQCLLHRALHLQERLP 506
Query: 485 --SEQVVDLTLPKVEAIKKRLGSLADEFKELVYP--PGYNPEGKVAKRK--QD--DEGST 536
+ ++++ P E +K++ S + K L +P + +V + QD +EG
Sbjct: 507 PIQQHILNIWDPPTE-MKQKCESPPLKVKTL-FPLTEVIKKKNQVTAQDVFQDNHEEGPA 564
Query: 537 SKKPKVELSEEELK-AHFRKGTLGKL 561
+KK K E E+ + + +G + K+
Sbjct: 565 AKKYKTEKEEDHISISSLAEGNITKV 590
Score = 61 (26.5 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 32/142 (22%), Positives = 59/142 (41%)
Query: 22 SLIFLVDASRAMFES-QGEDELTPFDMSIQCIQSVYTSKIISSDRDLLAVVFYGTEKDKN 80
+++ VD AM S GE+ +P + + + + ++ S +D +A+ YGT+
Sbjct: 9 AVVLCVDVGVAMGNSIPGEE--SPIEQAKKVMTMFVQRQVFSESKDEIALALYGTDGTDM 66
Query: 81 SVNFKNIYVLQDLDNPGAKRVLELDQFKGQQGKKHFRDTVGHGSDYSLSEVLWVCANLFS 140
++ K+ Y N R L L F + + +D+ + L VC +L
Sbjct: 67 PLSGKDQY-----QNITVCRHLMLPDFDLLEDIGNKIQPSSQQADFL--DALIVCMDLIQ 119
Query: 141 --DVQLKMSHKRIMLFTNEDDP 160
+ K K I +FT+ P
Sbjct: 120 RETIGKKFGKKHIEVFTDLRSP 141
>sp|P13010|KU86_HUMAN ATP-DEPENDENT DNA HELICASE II, 86 KD SUBUNIT (LUPUS KU
AUTOANTIGEN PROTEIN P86) (86 KD SUBUNIT OF KU ANTIGEN)
(THYROID-LUPUS AUTOANTIGEN) (TLAA) (CTC BOX BINDING FACTOR 85 KD
SUBUNIT) (CTCBF) (CTC85) (NUCLEAR FACTOR IV) (KU80).
Length = 731
Score = 104 (41.7 bits), Expect = 0.010, P = 0.010
Identities = 124/633 (19%), Positives = 259/633 (40%)
Query: 18 SGRDSLIFL-VDASRAMFESQGEDELTPFDMSIQCIQSVYTSKIISSDRDLLAVVFYGTE 76
SG + + L +D M S E +PF+ + + I ++ + ++D +A+V +GT+
Sbjct: 3 SGNKAAVVLCMDVGFTMSNSIPGIE-SPFEQAKKVITMFVQRQVFAENKDEIALVLFGTD 61
Query: 77 KDKNSVN----FKNIYV-----------LQDLDN---PGAKRVLELDQF-KGQQGKKHFR 117
N ++ ++NI V L+D+++ PG+++ LD +H
Sbjct: 62 GTDNPLSGGDQYQNITVHRHLMLPDFDLLEDIESKIQPGSQQADFLDALIVSMDVIQH-- 119
Query: 118 DTVGHGSDYSLSEVLWVCANLFSDVQLKM---SHKRIMLFTNEDDPHGXXXXXXXXXXXX 174
+T+G + E+ ++ FS QL + S K+ + P
Sbjct: 120 ETIGKKFEKRHIEIFTDLSSRFSKSQLDIIIHSLKKCDISLQFFLPFSLGKEDGSGDRGD 179
Query: 175 X-XXLRDTGIFLDLMHLKKPGGFDVSVFYRDIITTAEDEDLGVHFEESSKLEDLLRKVRA 233
L G L + + + + + ++ + E ED G+ +E + LRK+
Sbjct: 180 GPFRLGGHGPSFPLKGITEQQKEGLEIV-KMVMISLEGED-GL--DEIYSFSESLRKLCV 235
Query: 234 -KETKKRVLS-RLKFKLGEDVVLMVGIYN--LVQKANKPFPVRLYRET--NEPVKTKT-R 286
K+ ++ + + +G ++ + + Y L ++ K + V + +T E ++ +T
Sbjct: 236 FKKIERHSIHWPCRLTIGSNLSIRIAAYKSILQERVKKTWTV-VDAKTLKKEDIQKETVY 294
Query: 287 TFNVNTGSLLLPSDTKRSLTYGTRQIVLEKEETEELKRFDEPGLI-LMGFKPTVMLKKQH 345
N + + +L D + YG+ + K + E++K E ++GF + ++++
Sbjct: 295 CLNDDDETEVLKEDIIQGFRYGSDIVPFSKVDEEQMKYKSEGKCFSVLGFCKSSQVQRRF 354
Query: 346 YL-RPSLFVYPEESLVSGSSTLFSALLTKCVEKKVIAVCRYTHRKNVSPYFVALVPQEEE 404
++ L V+ + + L S+L+ + ++A+ RY + K +P P +
Sbjct: 355 FMGNQVLKVFAARDDEAAAVAL-SSLIHALDDLDMVAIVRYAYDKRANPQVGVAFPHIKH 413
Query: 405 LDDQNIQVTPGGF----QLVFLPYADDKRKVPFTEKVTANQEQIDKMKAIVQNVRFTYRS 460
+ + V Q +F + K+ P ++ A ID M ++ +
Sbjct: 414 NYECLVYVQLPFMEDLRQYMFSSLKNSKKYAPTEAQLNAVDALIDSMSLAKKDEKTDTLE 473
Query: 461 DSFE-----NPVLQQHFRNLEALALDMME-----SEQVVDLTLPKVEAIKKRLGSLADEF 510
D F NP Q+ F+ L AL E + + ++ P E K L+ +
Sbjct: 474 DLFPTTKIPNPRFQRLFQCLLHRALHPREPLPPIQQHIWNMLNPPAEVTTKSQIPLS-KI 532
Query: 511 KELVYPPGYNPEGKVAKRK--QD--DEGSTSKKPKVELSEEELKAHFRKGTLGKLTVPTL 566
K L + +V ++ QD ++G T+KK L E+ AHF +L + +V ++
Sbjct: 533 KTLFPLIEAKKKDQVTAQEIFQDNHEDGPTAKK----LKTEQGGAHFSVSSLAEGSVTSV 588
Query: 567 KDICKAHGLKSGPKK-----QELLDALIRHLEK 594
+ A + K+ +E + LI H+E+
Sbjct: 589 GSVNPAENFRVLVKQKKASFEEASNQLINHIEQ 621
>sp|P45912|YQAO_BACSU HYPOTHETICAL 7.6 KD PROTEIN IN SPOIIIC-CWLA INTERGENIC
REGION.
Length = 68
Score = 64 (27.6 bits), Expect = 0.33, P = 0.28
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 82 VNFKNIYVLQDLDNPGAKRVLELDQFKGQQGKKHFRDTVGHG 123
+N K + +Q +PG +++ LD G QG H D HG
Sbjct: 7 INIKKDFTIQQKIDPGKVQIIVLD---GNQGTAHVLDAPEHG 45
>sp|P03775|V03_BPT7 GENE 0.3 PROTEIN.
Length = 117
Score = 72 (30.4 bits), Expect = 0.88, P = 0.58
Identities = 21/82 (25%), Positives = 36/82 (43%)
Query: 178 LRDTGIFLDLMHLKKPGGFDVSVFYRDIITTAEDEDLGVHFEESSKLEDLLRKVRAKETK 237
+RDT D +H+ V +Y DI + E + + FE+S + D +R +
Sbjct: 28 IRDTDDLHDAIHMAADNA--VPHYYADIFSVMASEGIDLEFEDSGLMPDTKDVIRILQA- 84
Query: 238 KRVLSRLKFKLGEDVVLMVGIY 259
R+ +L L ED ++ Y
Sbjct: 85 -RIYEQLTIDLWEDAEDLLNEY 105
>sp|Q03673|YMO3_YEAST HYPOTHETICAL 22.7 KD PROTEIN IN CDC5-MVP1 INTERGENIC
REGION.
Length = 198
Score = 78 (32.5 bits), Expect = 0.97, P = 0.62
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 560 KLTVPTLKDICKAHGLKSGPKKQELLDALIRH 591
K TV LK+ CK+ GLK +K +LL LI H
Sbjct: 71 KFTVKVLKEQCKSRGLKLSGRKSDLLQRLITH 102
>sp|Q10369|YDBJ_SCHPO HYPOTHETICAL PROTEIN C22E12.19 IN CHROMOSOME I
(FRAGMENT).
Length = 230
Score = 77 (32.2 bits), Expect = 1.7, P = 0.81
Identities = 33/172 (19%), Positives = 76/172 (44%)
Query: 389 KNVSPYFVALVPQEEELDDQNIQVTPGGFQLVFLPYADDKRKVPFTEKVTANQEQIDKMK 448
+N+S Y + L+P E + D N + + + P +K T+ + +Q+ +
Sbjct: 16 RNMSRYTLGLLPSEPPVGDMNNEDSDTNTSITQSPTNSEK----LTDILQESQDTKALQE 71
Query: 449 AIVQNVRFTYRSDSFENPVLQQHFRNLEALALDMMESEQVVDLTLPKVEAIKKRLGSLAD 508
+QN+ ++ F+N V F NL + + +V + + + K++ L
Sbjct: 72 KYLQNIYALTQNQLFKN-VEDYSFYNLNREKFQR-DKQTIVGVMRKRRHVLNKKIKRLQS 129
Query: 509 EFKELVYPPGYNPEGKVAKRKQDDEGSTSKK--PKVELSEEELKAHFRKGTL 558
+K+++ N +V + + D+ +KK P ++ S ++ ++F G +
Sbjct: 130 HWKQVLGRWEENI-ARVDRLTEIDKTKNAKKSEPFIKRSTRKVMSNFTAGDI 180
>sp|P46211|EFG_AQUPY ELONGATION FACTOR G (EF-G).
Length = 700
Score = 83 (34.3 bits), Expect = 1.8, P = 0.83
Identities = 33/111 (29%), Positives = 53/111 (47%)
Query: 486 EQVVDLTLPKVEAIKKRLGSLADEFKELVYPPGYNPEGKVAKRKQ-------DDEGSTSK 538
E V+DL +++AI+ +L +++ + PPGY + + + K DDE
Sbjct: 176 EGVIDLM--EMKAIRWLEVTLGAKYEVIDIPPGYQEKAQEWREKMIETIVETDDELMEKY 233
Query: 539 KPKVELSEEELKAHFRKGTLGKLTVPTLKDICKAHGLKSGPKKQELLDALI 589
E++ EEL+ RK T+ + VP L C + G Q LLDA+I
Sbjct: 234 LEAQEITLEELRKALRKATINRQLVPVL---CGSAFKNKGV--QPLLDAVI 279
>sp|P32341|VM12_YEAST VACUOLAR ATPASE ASSEMBLY INTEGRAL MEMBRANE PROTEIN VMA12
(PROTEIN VPH2).
Length = 215
Score = 64 (27.6 bits), Expect = 4.2, Sum P(2) = 0.99
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 26 LVDASRAMFESQGEDELTPFDMSIQCIQSVYTS-KIISSDRDLLAVVFYGTEKDKN 80
+V S+++F Q +DELTP ++ Q + V T ++ S ++ ++Y T N
Sbjct: 106 MVKRSKSVFSLQEDDELTPSQINKQIKEQVTTVFNVLVSVISVVVAIWYWTGSSTN 161
Score = 48 (22.0 bits), Expect = 4.2, Sum P(2) = 0.99
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 213 DLGVHFEESSKLEDLLRKVRAKETKKRVLSRL 244
D+ V+ KLE+ K + K KK+VLS++
Sbjct: 182 DVVVYNSYLKKLEEAKVKEKTKVEKKKVLSKI 213
>sp|P09847|RPA2_METTH DNA-DIRECTED RNA POLYMERASE SUBUNIT A" (EC 2.7.7.6)
(SUBUNIT C).
Length = 449
Score = 64 (27.6 bits), Expect = 4.7, Sum P(2) = 0.99
Identities = 42/188 (22%), Positives = 74/188 (39%)
Query: 356 EESLVSGSSTLFSALLTKCVEKKVIAVCRYTHRKNVSPYFVAL-VPQEEELDDQNIQVTP 414
E ++V + + E R H V+ V L +P+ E+ D +++
Sbjct: 122 ERAMVEAGEAVGTVAAQSVGEPGTQMTMRTFHYAGVAELNVTLGLPRLIEIVDARKKIST 181
Query: 415 GGFQLVFLPYADDKRKVPFTEKVTANQEQIDKMKAIVQNVRFTYRSDSFE-----NPVLQ 469
+ F D K F K AN+ + +++N Y S E + +
Sbjct: 182 PTMSIYF--EGDRKYDEEFVRK-KANKICKSTLNDVLKNFSIQYADMSVEAELDEEKIRE 238
Query: 470 QHFRNLEALALDMMESEQV-VDLTLPKVEAIK---KRLGSLADEFKELVYPPGYNPEGKV 525
+H + +A ++V +D + + E K + L LAD+ ++L G GKV
Sbjct: 239 KHLEYDDIIAKVEKTFKKVEIDNNILRFEPPKPTIRELRLLADKVRKLQIS-GVKNIGKV 297
Query: 526 AKRKQDDE 533
RK+DDE
Sbjct: 298 VIRKEDDE 305
Score = 56 (24.8 bits), Expect = 4.7, Sum P(2) = 0.99
Identities = 23/73 (31%), Positives = 32/73 (43%)
Query: 215 GVHFEESSK---LEDLLRKV-RAKETKKRVLSRLKFKLGEDVVLMV-GIYNLVQKANKPF 269
G+ EE K L DL+R R E + + K ED L + + LV++ F
Sbjct: 29 GIAEEEKLKDPELHDLVRLFSRICERNRGLEGEELLKAVEDEYLRILKVRELVKRKRAKF 88
Query: 270 PVRLYRETNEPVK 282
P RL E E +K
Sbjct: 89 PPRLIEEIAEAIK 101
>sp|Q49419|Y328_MYCGE HYPOTHETICAL PROTEIN MG328.
Length = 756
Score = 64 (27.6 bits), Expect = 4.9, Sum P(3) = 0.99
Identities = 32/104 (30%), Positives = 50/104 (48%)
Query: 27 VDASRAMFESQGE-DELTPFDMSIQCIQSVY--TSKI--ISSDRDLLAVVFYGT----EK 77
VD + + E DE T +Q ++ SKI I +R+LL F+GT EK
Sbjct: 3 VDKELEISDFDNELDEKTLLKELVQRTNNILFSPSKITAIPFERNLLEKTFFGTVDEAEK 62
Query: 78 DKNSVNFKNIYV-LQDLDNPGAKRVLE--LDQFKGQQGKKHFRD 118
+K+ V+F N + L+ LD K VL +Q K ++ ++ D
Sbjct: 63 EKSIVSFFNWMIDLKVLDKKWDKNVLNHYANQLKTREEEQQTVD 106
Score = 53 (23.7 bits), Expect = 4.9, Sum P(3) = 0.99
Identities = 24/91 (26%), Positives = 40/91 (43%)
Query: 460 SDSFENPVLQQHFRNLEALALDMMESEQVVDLTLPKVEAIKKRLGSLADEFKELVYPPGY 519
SDS EN L+Q +LE ++ + D L ++E +K L E + L Y
Sbjct: 632 SDS-ENNQLKQQINSLENAKKELQFTPVTSDEHLDELETLKIEKEQLFLENQALQNQLQY 690
Query: 520 NPEGKVAKRKQDDEGSTSKKPKVELSEEELK 550
+ + ++ E S KP VE+ + +K
Sbjct: 691 FNDISANQTEEIKEASDEDKP-VEIKKPRIK 720
Score = 51 (23.0 bits), Expect = 7.5, Sum P(3) = 1.0
Identities = 19/84 (22%), Positives = 36/84 (42%)
Query: 432 PFTEKVTANQEQIDKMKAIVQNV--RFTYRSDSFEN-----PVLQQHFRNLEALALDMME 484
P +++V E + + KA++ + +S + + PVL L+ L E
Sbjct: 317 PLSDEVNEELENLKQEKALLSDQLDALKNKSSNVQQQLALLPVLNNQINELQNQLLTARE 376
Query: 485 SEQVVDLTLPKVEAIKKRLGSLAD 508
+ Q +DL + + +K L L D
Sbjct: 377 ANQRLDLVEQENDFLKNELKKLHD 400
Score = 50 (22.7 bits), Expect = 9.2, Sum P(3) = 1.0
Identities = 26/115 (22%), Positives = 50/115 (43%)
Query: 441 QEQIDKMKAIVQNVRFT-----YRSDSFENPVLQQHFRNLEALALDMMESEQVVDLTLPK 495
++QI+ ++ + ++FT D E +++ LE AL + + D++ +
Sbjct: 640 KQQINSLENAKKELQFTPVTSDEHLDELETLKIEKEQLFLENQALQN-QLQYFNDISANQ 698
Query: 496 VEAIKKRLGSLADEFKEL-VYPPGYNPEGKVAKRKQDDEGSTSKKPKVELSEEEL 549
E IK+ +DE K + + P V + K D SKK +++ E L
Sbjct: 699 TEEIKEA----SDEDKPVEIKKPRIKKRDFVIQNKDDKLAKLSKKERIQAYAERL 749
Score = 48 (22.0 bits), Expect = 4.9, Sum P(3) = 0.99
Identities = 18/67 (26%), Positives = 30/67 (44%)
Query: 263 QKANKPFPVRLYRETNEPVKTKTRTFNVNTGSLLLPS-DTKRSLT----YGTRQIVLEKE 317
Q ++PF V+ + P K + N LLL + D K+ + QI ++
Sbjct: 212 QNDDQPFVVKRILKEQHPTKKVDELDDYNNKELLLENADLKKQIDDLKENNNDQIFDLEQ 271
Query: 318 ETEELKR 324
E ++LKR
Sbjct: 272 EIDDLKR 278
>sp|P21169|DCOR_ECOLI ORNITHINE DECARBOXYLASE, CONSTITUTIVE (EC 4.1.1.17).
Length = 731
Score = 79 (32.9 bits), Expect = 5.1, P = 0.99
Identities = 21/70 (30%), Positives = 32/70 (45%)
Query: 92 DLDNPGAKRVLELDQFKGQ-QGKKHFRDTVGHGSDYSLSEVLWVCANLFSDVQLKMSHKR 150
DL P +++L + G + DTVGH DY L + WV F + +
Sbjct: 290 DLPRPYRLAIIQLGTYDGTVYNARQVIDTVGHLCDYILFDSAWVGYEQF--IPMMADSSP 347
Query: 151 IMLFTNEDDP 160
++L NE+DP
Sbjct: 348 LLLELNENDP 357
>sp|P50519|HSP9_SCHPO HEAT SHOCK PROTEIN HSP9.
Length = 68
Score = 51 (23.0 bits), Expect = 8.2, P = 1.0
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 28 DASRAMFESQGEDELTPFDMSIQCIQSVYTSKIISSDRDLLAVVFYGTEKDKNS 81
D +R F QG++++TP D S + S I+ D +A F E DK++
Sbjct: 3 DPARKSFTEQGKEKMTP-DSSKSTLDKAKES--ITGAYDKVASAFTSDE-DKST 52
>sp|P48780|RS15_MYCFL 30S RIBOSOMAL PROTEIN S15.
Length = 88
Score = 59 (25.8 bits), Expect = 9.2, P = 1.0
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 197 DVSVFYRDIITTAED-EDLGVHFEESSKLEDLLRKVRAKETK-KRVLSRLKFK 247
D+SV I ED E L +HFE++ K + +R AK K K++L+ LK K
Sbjct: 23 DISV---QIALLPEDIEKLKLHFEKNKKDKHSMRGFIAKVNKRKKLLNYLKEK 72
Parameters:
cpus=1
filter=seg
postsw
ctxfactor=1.00
E=10
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.136 0.382 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 595 595 10. 75 3 11 22 0.21 34
36 0.22 37
Statistics:
Database: /am/db/blast/sp35
Title: SWISS-PROT Release 35.0
Released: November 30, 1997
Posted: 2:27:45 PM CST Dec 15, 1997
Format: BLAST-1.4
# of letters in database: 25,083,768
# of sequences in database: 69,113
# of database sequences satisfying E: 17
No. of states in DFA: 561 (55 KB)
Total size of DFA: 169 KB (192 KB)
Time to generate neighborhood: 0.02u 0.00s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 1
Search cpu time: 25.86u 0.28s 26.14t Elapsed: 00:00:27
Total cpu time: 25.97u 0.32s 26.29t Elapsed: 00:00:27
Start: Wed Sep 20 17:46:14 2000 End: Wed Sep 20 17:46:41 2000
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