BLASTP 2.2.2 [Jan-08-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|125730|sp|P23475|KU70_MOUSE ATP-DEPENDENT DNA HELICASE II,
70 KD SUBUNIT HOMOLOG (LUPUS KU AUTOANTIGEN PROTEIN P70) (70 KD
SUBUNIT OF KU ANTIGEN) (THYROID-LUPUS AUTOANTIGEN) (TLAA) (CTC BOX
BINDING FACTOR 75 KD SUBUNIT) (CTCBF) (CTC75).gi|198637 (M38700) p70
Ku lupus autoantigen [Mus musculus]
(595 letters)
Database: sp35
69,113 sequences; 25,083,768 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|198637|sp|P23475|KU70_MOUSE ATP-DEPENDENT DNA HELICASE II, 70... 1016 0.0
gi|250497|sp|P12956|KU70_HUMAN ATP-DEPENDENT DNA HELICASE II, 70... 857 0.0
gi|825550|sp|P32807|HDF1_YEAST HIGH AFFINITY DNA-BINDING FACTOR ... 81 2e-15
gi|817864|sp|Q04437|HDF2_YEAST HIGH AFFINITY DNA-BINDING FACTOR ... 44 5e-04
gi|461336|sp|P37899|HS70_PYRSA HEAT SHOCK 70 KD PROTEIN. 34 0.41
gi|642967|sp|P46211|EFG_AQUPY ELONGATION FACTOR G (EF-G). 34 0.52
gi|1789337|sp|P21169|DCOR_ECOLI ORNITHINE DECARBOXYLASE, CONSTIT... 32 1.3
gi|728650|sp|Q03673|YMO3_YEAST HYPOTHETICAL 22.7 KD PROTEIN IN C... 32 1.7
sp|Q10369|YDBJ_SCHPO HYPOTHETICAL PROTEIN C22E12.19 IN CHROMOSOM... 32 2.2
gi|500691|sp|P08964|MYS1_YEAST MYOSIN-1 ISOFORM (TYPE II MYOSIN). 31 3.5
gi|1314871|sp|Q92834|RPGR_HUMAN X-LINKED RETINITIS PIGMENTOSA GT... 31 4.4
sp|P38525|EFG_THEMA ELONGATION FACTOR G (EF-G). 31 4.4
gi|794024|sp|P24339|CUT7_SCHPO KINESIN-LIKE PROTEIN CUT7. 30 5.6
gi|1016027|sp|P54623|CNN_DROME CENTROSOMIN (ARROW PROTEIN). 30 5.6
gi|15499|sp|P03775|V03_BPT7 GENE 0.3 PROTEIN. 30 7.2
gi|1688301|sp|Q09088|OSA6_BORBU OUTER SURFACE PROTEIN A PRECURSOR. 30 9.1
>gi|198637|sp|P23475|KU70_MOUSE ATP-DEPENDENT DNA HELICASE II, 70 KD
SUBUNIT (KU70) (CTC BOX BINDING FACTOR 75 KD SUBUNIT)
(CTCBF) (CTC75) (FRAGMENT).
Length = 595
Score = 1016 bits (2934), Expect = 0.0
Identities = 573/588 (97%), Positives = 573/588 (97%)
Query: 8 SPDTGGEYKYSGRDSLIFLVDASRAMFESQGEDELTPFDMSIQCIQSVYTSKIISSDRDL 67
SPDTGGEYKYSGRDSLIFLVDASRAMFESQGEDELTPFDMSIQCIQSVYTSKIISSDRDL
Sbjct: 8 SPDTGGEYKYSGRDSLIFLVDASRAMFESQGEDELTPFDMSIQCIQSVYTSKIISSDRDL 67
Query: 68 LAVVFYGTEKDKNSVNFKNIYVLQDLDNPGAKRVLELDQFKGQQGKKHFRDTVGHGSDYS 127
LAVVFYGTEKDKNSVNFKNIYVLQDLDNPGAKRVLELDQFKGQQGKKHFRDTVGHGSDYS
Sbjct: 68 LAVVFYGTEKDKNSVNFKNIYVLQDLDNPGAKRVLELDQFKGQQGKKHFRDTVGHGSDYS 127
Query: 128 LSEVLWVCANLFSDVQLKMSHKRIMLFTNEDDPHGXXXXXXXXXXXXXXXLRDTGIFLDL 187
LSEVLWVCANLFSDVQLKMSHKRIMLFTNEDDPHG LRDTGIFLDL
Sbjct: 128 LSEVLWVCANLFSDVQLKMSHKRIMLFTNEDDPHGRDSAKASRARTKASDLRDTGIFLDL 187
Query: 188 MHLKKPGGFDVSVFYRDIITTAEDEDLGVHFEESSKLEDLLRKVRAKETKKRVLSRLKFK 247
MHLKKPGGFDVSVFYRDIITTAEDEDLGVHFEESSKLEDLLRKVRAKETKKRVLSRLKFK
Sbjct: 188 MHLKKPGGFDVSVFYRDIITTAEDEDLGVHFEESSKLEDLLRKVRAKETKKRVLSRLKFK 247
Query: 248 LGEDVVLMVGIYNLVQKANKPFPVRLYRETNEPVKTKTRTFNVNTGSLLLPSDTKRSLTY 307
LGEDVVLMVGIYNLVQKANKPFPVRLYRETNEPVKTKTRTFNVNTGSLLLPSDTKRSLTY
Sbjct: 248 LGEDVVLMVGIYNLVQKANKPFPVRLYRETNEPVKTKTRTFNVNTGSLLLPSDTKRSLTY 307
Query: 308 GTRQIVLEKEETEELKRFDEPGLILMGFKPTVMLKKQHYLRPSLFVYPEESLVSGSSTLF 367
GTRQIVLEKEETEELKRFDEPGLILMGFKPTVMLKKQHYLRPSLFVYPEESLVSGSSTLF
Sbjct: 308 GTRQIVLEKEETEELKRFDEPGLILMGFKPTVMLKKQHYLRPSLFVYPEESLVSGSSTLF 367
Query: 368 SALLTKCVEKKVIAVCRYTHRKNVSPYFVALVPQEEELDDQNIQVTPGGFQLVFLPYADD 427
SALLTKCVEKKVIAVCRYTHRKNVSPYFVALVPQEEELDDQNIQVTPGGFQLVFLPYADD
Sbjct: 368 SALLTKCVEKKVIAVCRYTHRKNVSPYFVALVPQEEELDDQNIQVTPGGFQLVFLPYADD 427
Query: 428 KRKVPFTEKVTANQEQIDKMKAIVQNVRFTYRSDSFENPVLQQHFRNLEALALDMMESEQ 487
KRKVPFTEKVTANQEQIDKMKAIVQNVRFTYRSDSFENPVLQQHFRNLEALALDMMESEQ
Sbjct: 428 KRKVPFTEKVTANQEQIDKMKAIVQNVRFTYRSDSFENPVLQQHFRNLEALALDMMESEQ 487
Query: 488 VVDLTLPKVEAIKKRLGSLADEFKELVYPPGYNPEGKVAKRKQDDEGSTSKKPKVELSEE 547
VVDLTLPKVEAIKKRLGSLADEFKELVYPPGYNPEGKVAKRKQDDEGSTSKKPKVELSEE
Sbjct: 488 VVDLTLPKVEAIKKRLGSLADEFKELVYPPGYNPEGKVAKRKQDDEGSTSKKPKVELSEE 547
Query: 548 ELKAHFRKGTLGKLTVPTLKDICKAHGLKSGPKKQELLDALIRHLEKN 595
ELKAHFRKGTLGKLTVPTLKDICKAHGLKSGPKKQELLDALIRHLEKN
Sbjct: 548 ELKAHFRKGTLGKLTVPTLKDICKAHGLKSGPKKQELLDALIRHLEKN 595
>gi|250497|sp|P12956|KU70_HUMAN ATP-DEPENDENT DNA HELICASE II, 70 KD
SUBUNIT (LUPUS KU AUTOANTIGEN PROTEIN P70) (70 KD
SUBUNIT OF KU ANTIGEN) (THYROID-LUPUS AUTOANTIGEN)
(TLAA) (KU70) (CTC BOX BINDING FACTOR 75 KD SUBUNIT)
(CTCBF) (CTC75).
Length = 608
Score = 857 bits (2473), Expect = 0.0
Identities = 473/584 (80%), Positives = 518/584 (87%)
Query: 10 DTGGEYKYSGRDSLIFLVDASRAMFESQGEDELTPFDMSIQCIQSVYTSKIISSDRDLLA 69
+ G+YKYSGRDSLIFLVDAS+AMFESQ EDELTPFDMSIQCIQSVY SKIISSDRDLLA
Sbjct: 24 EASGDYKYSGRDSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLA 83
Query: 70 VVFYGTEKDKNSVNFKNIYVLQDLDNPGAKRVLELDQFKGQQGKKHFRDTVGHGSDYSLS 129
VVFYGTEKDKNSVNFKNIYVLQ+LDNPGAKR+LELDQFKGQQG+K F+D +GHGSDYSLS
Sbjct: 84 VVFYGTEKDKNSVNFKNIYVLQELDNPGAKRILELDQFKGQQGQKRFQDMMGHGSDYSLS 143
Query: 130 EVLWVCANLFSDVQLKMSHKRIMLFTNEDDPHGXXXXXXXXXXXXXXXLRDTGIFLDLMH 189
EVLWVCANLFSDVQ KMSHKRIMLFTNED+PHG LRDTGIFLDLMH
Sbjct: 144 EVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDLMH 203
Query: 190 LKKPGGFDVSVFYRDIITTAEDEDLGVHFEESSKLEDLLRKVRAKETKKRVLSRLKFKLG 249
LKKPGGFD+S+FYRDII+ AEDEDL VHFEESSKLEDLLRKVRAKET+KR LSRLK KL
Sbjct: 204 LKKPGGFDISLFYRDIISIAEDEDLRVHFEESSKLEDLLRKVRAKETRKRALSRLKLKLN 263
Query: 250 EDVVLMVGIYNLVQKANKPFPVRLYRETNEPVKTKTRTFNVNTGSLLLPSDTKRSLTYGT 309
+D+V+ VGIYNLVQKA KP P++LYRETNEPVKTKTRTFN +TG LLLPSDTKRS YG+
Sbjct: 264 KDIVISVGIYNLVQKALKPPPIKLYRETNEPVKTKTRTFNTSTGGLLLPSDTKRSQIYGS 323
Query: 310 RQIVLEKEETEELKRFDEPGLILMGFKPTVMLKKQHYLRPSLFVYPEESLVSGSSTLFSA 369
RQI+LEKEETEELKRFD+PGL+LMGFKP V+LKK HYLRPSLFVYPEESLV GSSTLFSA
Sbjct: 324 RQIILEKEETEELKRFDDPGLMLMGFKPLVLLKKHHYLRPSLFVYPEESLVIGSSTLFSA 383
Query: 370 LLTKCVEKKVIAVCRYTHRKNVSPYFVALVPQEEELDDQNIQVTPGGFQLVFLPYADDKR 429
LL KC+EK+V A+CRYT R+N+ PYFVALVPQEEELDDQ IQVTP GFQLVFLP+ADDKR
Sbjct: 384 LLIKCLEKEVAALCRYTPRRNIPPYFVALVPQEEELDDQKIQVTPPGFQLVFLPFADDKR 443
Query: 430 KVPFTEKVTANQEQIDKMKAIVQNVRFTYRSDSFENPVLQQHFRNLEALALDMMESEQVV 489
K+PFTEK+ A EQ+ KMKAIV+ +RFTYRSDSFENPVLQQHFRNLEALALD+ME EQ V
Sbjct: 444 KMPFTEKIMATPEQVGKMKAIVEKLRFTYRSDSFENPVLQQHFRNLEALALDLMEPEQAV 503
Query: 490 DLTLPKVEAIKKRLGSLADEFKELVYPPGYNPEGKVAKRKQDDEGSTSKKPKVELSEEEL 549
DLTLPKVEA+ KRLGSL DEFKELVYPP YNPEGKV KRK D+EGS SK+PKVE SEEEL
Sbjct: 504 DLTLPKVEAMNKRLGSLVDEFKELVYPPDYNPEGKVTKRKHDNEGSGSKRPKVEYSEEEL 563
Query: 550 KAHFRKGTLGKLTVPTLKDICKAHGLKSGPKKQELLDALIRHLE 593
K H KGTLGK TVP LK+ C+A+GLKSG KKQELL+AL +H +
Sbjct: 564 KTHISKGTLGKFTVPMLKEACRAYGLKSGLKKQELLEALTKHFQ 607
>gi|825550|sp|P32807|HDF1_YEAST HIGH AFFINITY DNA-BINDING FACTOR
SUBUNIT 1 (KU70 HOMOLOG).
Length = 602
Score = 81.4 bits (221), Expect = 2e-15
Identities = 126/549 (22%), Positives = 225/549 (40%), Gaps = 63/549 (11%)
Query: 10 DTGGEYKYSGRDSLIFLVDASRAMFESQGEDEL-TPFDMSIQCIQSVYTSKIISSDRDLL 68
D G K+ + ++F ++ S MF+ + E +P ++ + + + +I+ +
Sbjct: 19 DETGYRKFDIHEGILFCIELSETMFKESSDLEYKSPLLEILESLDELMSQLVITRPGTAI 78
Query: 69 AVVFYGTEKDKNSVNFKNIYVLQDLDNPGAKRVLEL--DQFKGQQGKKH---FRDTVGHG 123
FY ++ ++ L+D++ K++ +L D G+ F+ T G
Sbjct: 79 GCYFYYCNREDAKEGIYELFPLRDINATFMKKLNDLLEDLSSGRISLYDYFMFQQT-GSE 137
Query: 124 SDYSLSEVLWVCANLFSDV---QLKMSHKRIMLFTNEDDPH-GXXXXXXXXXXXXXXXLR 179
LS + + F + Q ++S+KR+ LFT+ D P L
Sbjct: 138 KQVRLSVLFTFMLDTFLEEIPGQKQLSNKRVFLFTDIDKPQEAQDIDERARLRRLTIDLF 197
Query: 180 DTGI-FLDLM--HLKKPGGFDVSVFYRDIIT----TAEDEDLGVHFE-ESSKLEDLLRKV 231
D + F + KP FD + FY DI+ T E+ L F+ S+K D + +
Sbjct: 198 DNKVNFATFFIGYADKP--FD-NEFYSDILQLGSHTNENTGLDSEFDGPSTKPIDA-KYI 253
Query: 232 RAKETKKRVLSRLKFK----LGEDVVLMVGI--YNLV--QKANKPFP-VRLYRETNEPVK 282
+++ +K+ + R+ F+ L E +VG+ Y + +KA + V + + +
Sbjct: 254 KSRILRKKEVKRIMFQCPLILDEKTNFIVGVKGYTMYTHEKAGVRYKLVYEHEDIRQEAY 313
Query: 283 TKTRTFNVNTGSLLLPSDTKRSLTYGTRQIVLEKEETE---ELKRFDEPGLILMGFKPTV 339
+K + N TG + T + YG I L + + E + L ++GF+ +
Sbjct: 314 SKRKFLNPITGEDVT-GKTVKVYPYGDLDINLSDSQDQIVMEAYTQKDAFLKIIGFRSSS 372
Query: 340 MLKKQHYLR---PSLFVYPEESLVSGSSTLFSALLTKCVEKKVIAVCRYTHRKNVSPYFV 396
K HY S F+ P+E+ GS ++LL +K IA+ + N P
Sbjct: 373 --KSIHYFNNIDKSSFIVPDEAKYEGSIRTLASLLKILRKKDKIAILWGKLKSNSHPSLY 430
Query: 397 ALVPQEEELDDQNIQVTPGGFQLVFLPYADDKRKVPFTEKVTANQEQ---IDKMKAIVQ- 452
L P + D N GF L +P+ D+ RK P E D MK + Q
Sbjct: 431 TLSPSS--VKDYN-----EGFYLYRVPFLDEIRKFPSLLSYDDGSEHKLDYDNMKKVTQS 483
Query: 453 -----NVRFTYRSDSFENPVLQQHFRNLEALALDMMESEQVVDLT-LPKVEAIKKRLGSL 506
N+R Y F+NP+LQ+H++ L +++ E D P + K R+
Sbjct: 484 IMGYFNLRDGYNPSDFKNPLLQKHYKVLHDY---LLQIETTFDENETPNTK--KDRMMRE 538
Query: 507 ADEFKELVY 515
D ++L Y
Sbjct: 539 DDSLRKLYY 547
>gi|817864|sp|Q04437|HDF2_YEAST HIGH AFFINITY DNA-BINDING FACTOR
SUBUNIT 2 (KU80 HOMOLOG).
Length = 629
Score = 43.8 bits (112), Expect = 5e-04
Identities = 49/167 (29%), Positives = 73/167 (43%), Gaps = 8/167 (4%)
Query: 274 YRETNEPVKTKTRTFNVNTGSLLLP-SDTKRSLT----YGTRQIVLEKEETEELKRFDEP 328
Y NE K K + + +GS +P + +K S+T YG +VL ++ P
Sbjct: 282 YEIHNEGNK-KNVSEDDQSGSSYIPVTISKDSVTKAYRYGADYVVLPSVLVDQTVYESFP 340
Query: 329 GLILMGFKPTVMLKKQHYLRPSLFVYPEESLVSGSSTL-FSALLTKCVEKKVIAVCRYTH 387
GL L GF L + S F+ + L S + FSAL+ +E + IAV RY
Sbjct: 341 GLDLRGFLNREALPRYFLTSESSFITADTRLGCQSDLMAFSALVDVMLENRKIAVARYVS 400
Query: 388 RKNVSPYFVALVPQEEELDDQNIQVT-PGGFQLVFLPYADDKRKVPF 433
+K+ AL P E + N + L LP+A+D+R F
Sbjct: 401 KKDSEVNMCALCPVLIEHSNINSEKKFVKSLTLCRLPFAEDERVTDF 447
>gi|461336|sp|P37899|HS70_PYRSA HEAT SHOCK 70 KD PROTEIN.
Length = 649
Score = 34.2 bits (84), Expect = 0.41
Identities = 27/125 (21%), Positives = 57/125 (45%), Gaps = 9/125 (7%)
Query: 428 KRKVPFTEKVTANQEQIDK-------MKAIVQNVRFTYRSDSFENPVLQQHFRNLEALAL 480
+R V EK E++DK ++ N+R T R + + + ++ +++E
Sbjct: 522 ERMVEEAEKYKTEDEKLDKKLEAKNSLENYAYNIRNTVRDEKLKEKIQEEDKKSIEEKVK 581
Query: 481 DMME-SEQVVDLTLPKVEAIKKRLGSLADEFKELVYPPGYNPE-GKVAKRKQDDEGSTSK 538
+++E E DL + E +K L + A+ +Y G P+ G + + + + + +
Sbjct: 582 EVLEFIETNEDLEKEEYEEKEKELKNFANPIISKLYQQGSVPDMGNFSTGQNEQDDNANM 641
Query: 539 KPKVE 543
PK+E
Sbjct: 642 GPKIE 646
>gi|642967|sp|P46211|EFG_AQUPY ELONGATION FACTOR G (EF-G).
Length = 700
Score = 33.8 bits (83), Expect = 0.52
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 14/111 (12%)
Query: 486 EQVVDLTLPKVEAIKKRLGSLADEFKELVYPPGYNPEGKVAKRKQ-------DDEGSTSK 538
E V+DL +++AI+ +L +++ + PPGY + + + K DDE
Sbjct: 176 EGVIDLM--EMKAIRWLEVTLGAKYEVIDIPPGYQEKAQEWREKMIETIVETDDELMEKY 233
Query: 539 KPKVELSEEELKAHFRKGTLGKLTVPTLKDICKAHGLKSGPKKQELLDALI 589
E++ EEL+ RK T+ + VP L C + G Q LLDA+I
Sbjct: 234 LEAQEITLEELRKALRKATINRQLVPVL---CGSAFKNKG--VQPLLDAVI 279
>gi|1789337|sp|P21169|DCOR_ECOLI ORNITHINE DECARBOXYLASE,
CONSTITUTIVE (EC 4.1.1.17).
Length = 731
Score = 32.5 bits (79), Expect = 1.3
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 92 DLDNPGAKRVLELDQFKGQ-QGKKHFRDTVGHGSDYSLSEVLWVCANLFSDVQLKMSHKR 150
DL P +++L + G + DTVGH DY L + WV F + +
Sbjct: 290 DLPRPYRLAIIQLGTYDGTVYNARQVIDTVGHLCDYILFDSAWVGYEQF--IPMMADSSP 347
Query: 151 IMLFTNEDDP 160
++L NE+DP
Sbjct: 348 LLLELNENDP 357
>gi|728650|sp|Q03673|YMO3_YEAST HYPOTHETICAL 22.7 KD PROTEIN IN
CDC5-MVP1 INTERGENIC REGION.
Length = 198
Score = 32.1 bits (78), Expect = 1.7
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 560 KLTVPTLKDICKAHGLKSGPKKQELLDALIRH 591
K TV LK+ CK+ GLK +K +LL LI H
Sbjct: 71 KFTVKVLKEQCKSRGLKLSGRKSDLLQRLITH 102
>sp|Q10369|YDBJ_SCHPO HYPOTHETICAL PROTEIN C22E12.19 IN CHROMOSOME I
(FRAGMENT).
Length = 230
Score = 31.8 bits (77), Expect = 2.2
Identities = 33/172 (19%), Positives = 76/172 (44%), Gaps = 9/172 (5%)
Query: 389 KNVSPYFVALVPQEEELDDQNIQVTPGGFQLVFLPYADDKRKVPFTEKVTANQEQIDKMK 448
+N+S Y + L+P E + D N + + + P +K T+ + +Q+ +
Sbjct: 16 RNMSRYTLGLLPSEPPVGDMNNEDSDTNTSITQSPTNSEK----LTDILQESQDTKALQE 71
Query: 449 AIVQNVRFTYRSDSFENPVLQQHFRNLEALALDMMESEQVVDLTLPKVEAIKKRLGSLAD 508
+QN+ ++ F+N V F NL + + +V + + + K++ L
Sbjct: 72 KYLQNIYALTQNQLFKN-VEDYSFYNLNREKF-QRDKQTIVGVMRKRRHVLNKKIKRLQS 129
Query: 509 EFKELVYPPGYNPEGKVAKRKQDDEGSTSKK--PKVELSEEELKAHFRKGTL 558
+K+++ N +V + + D+ +KK P ++ S ++ ++F G +
Sbjct: 130 HWKQVLGRWEEN-IARVDRLTEIDKTKNAKKSEPFIKRSTRKVMSNFTAGDI 180
>gi|500691|sp|P08964|MYS1_YEAST MYOSIN-1 ISOFORM (TYPE II MYOSIN).
Length = 1928
Score = 31.1 bits (75), Expect = 3.5
Identities = 40/144 (27%), Positives = 67/144 (45%), Gaps = 23/144 (15%)
Query: 430 KVPFTEKVTANQE-QIDKMKAIVQNVRFT---YRSDSFENPVLQQHFRNLEALALDMMES 485
++ FTE +T N E +I++ K ++ +RFT S SFE+ ++ + L+ L DM S
Sbjct: 1238 QLAFTE-ITRNLENEIEEKKNLISRLRFTETRLASSSFEDQKIKAQMKKLKKLIQDMDPS 1296
Query: 486 ---EQVVDLTL---PKVEAIKKRLGSLADEFK---ELVYPPGYNPEGKVAK-----RKQD 531
+ +++ L P E+ +L D K ++ Y+ E ++ RK
Sbjct: 1297 IPLDSILNEPLDNCPDKESDINKLMLEVDYLKRQLDIETRAHYDAENAISALHSKFRKIQ 1356
Query: 532 DEGSTSK----KPKVELSEEELKA 551
E S S K K E SEE +K+
Sbjct: 1357 GESSLSSSDIYKLKFEASEERVKS 1380
>gi|1314871|sp|Q92834|RPGR_HUMAN X-LINKED RETINITIS PIGMENTOSA
GTPASE REGULATOR.
Length = 815
Score = 30.7 bits (74), Expect = 4.4
Identities = 31/117 (26%), Positives = 52/117 (43%), Gaps = 14/117 (11%)
Query: 435 EKVTANQEQIDKMKAIVQNVRFTYRSDSFENPVLQQHFRNLEALALDMMESEQVVDLTLP 494
++V AN+E + K+ + + SD + F E L L+ ++ E +
Sbjct: 604 QEVEANEENV-KVHG-GRKEKTEILSDDLTDKAEDHEFSKTEELKLEDVDEE----INAE 657
Query: 495 KVEAIKKRLGSLADEFKELVYPPGYNPEGKVAKRKQDDEGSTS--KKPKVELSEEEL 549
VE+ KK +G DE P GY+ + + A+R DD + + KK K L E +
Sbjct: 658 NVESKKKTVGD--DES----VPTGYHSKTEGAERTNDDSSAETIEKKEKANLEERAI 708
>sp|P38525|EFG_THEMA ELONGATION FACTOR G (EF-G).
Length = 682
Score = 30.7 bits (74), Expect = 4.4
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 543 ELSEEELKAHFRKGTLGKLTVPTLKDICKAHGLKSGPKKQELLDALIRHL 592
E+SEEE+K RK T+ VP L C A K+ Q LLDA+I +L
Sbjct: 238 EISEEEIKRVLRKATIENKAVPVL---CGA--AKANKGIQPLLDAVIDYL 282
>gi|794024|sp|P24339|CUT7_SCHPO KINESIN-LIKE PROTEIN CUT7.
Length = 1085
Score = 30.4 bits (73), Expect = 5.6
Identities = 55/267 (20%), Positives = 108/267 (39%), Gaps = 25/267 (9%)
Query: 260 NLVQKANKPFPVRLYRETNEPV--KTKTRTFNVNTGSLLLPSDTKRSLTYGTRQIVLEKE 317
+L +++ F + L+R+ + + +T + T N N+ LL S G+ I
Sbjct: 280 DLSSRSHSIFTITLHRKVSSGMTDETNSLTINNNSDDLLRASKLHMVDLAGSENIGRSGA 339
Query: 318 ETEELKRFD--EPGLILMGFKPTVMLKKQHYL--RPSLFVYPEESLVSG---SSTLFSAL 370
E + + L+ +G +++K H++ R S + + G +S + +
Sbjct: 340 ENKRARETGMINQSLLTLGRVINALVEKAHHIPYRESKLTRLLQDSLGGKTKTSMIVTVS 399
Query: 371 LTKCVEKKVIAVCRYTHR-KNV--SPYFVALVPQE----------EEL-DDQNIQVTPGG 416
T ++ I+ Y R K++ P LV ++ E L +D N G
Sbjct: 400 STNTNLEETISTLEYAARAKSIRNKPQNNQLVFRKVLIKDLVLDIERLKNDLNATRKKNG 459
Query: 417 FQLVFLPYADDKRKVPFTEKVTANQEQIDKMKAIVQNVRFTYRSDSFENPVLQQHFRNLE 476
L Y + +V K QEQ K++ + NV+ + + + Q+H + +E
Sbjct: 460 VYLAESTYKELMDRVQ--NKDLLCQEQARKLEVLDLNVKSSREQLQYVSKSNQEHKKEVE 517
Query: 477 ALALDMMESEQVVDLTLPKVEAIKKRL 503
AL L ++ S ++ + E +K L
Sbjct: 518 ALQLQLVNSSTELESVKSENEKLKNEL 544
>gi|1016027|sp|P54623|CNN_DROME CENTROSOMIN (ARROW PROTEIN).
Length = 1033
Score = 30.4 bits (73), Expect = 5.6
Identities = 44/184 (23%), Positives = 78/184 (41%), Gaps = 16/184 (8%)
Query: 426 DDKRKVPFTEKVTANQEQIDKMKAIVQNVRFTYRSDSFENPVLQQHFRNLEALALDMMES 485
+++R V ++ +QID++K + + E LQQ + +E D +E+
Sbjct: 787 EEERMVELQRQLELKNQQIDQLKLAHSTLTADSQITEMELQALQQQMQEIEQQHADSVET 846
Query: 486 --EQVVDLTLPKVEAIK--KRLGSLADEFKELVYPPGYNPEGK---VAKRKQDDEGSTSK 538
Q+ L L V+ ++ +RL A E ++ V Y + + +R D K
Sbjct: 847 LQSQLQKLKLDAVQQLEEHERLHREALE-RDWVALTTYQEQAQQLLELQRSLDYHQENEK 905
Query: 539 KPKVELSEEELKAHFRKGTLGKLTVPTLKDI---CKAHG--LKSGPKKQEL---LDALIR 590
+ K L E EL K L + T+ K + KA+ L+ + +EL L+AL
Sbjct: 906 ELKQTLVENELATRALKKQLDESTLQASKAVMERTKAYNDKLQLEKRSEELRLQLEALKE 965
Query: 591 HLEK 594
+K
Sbjct: 966 EHQK 969
>gi|15499|sp|P03775|V03_BPT7 GENE 0.3 PROTEIN.
Length = 117
Score = 30.0 bits (72), Expect = 7.2
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 178 LRDTGIFLDLMHLKKPGGFDVSVFYRDIITTAEDEDLGVHFEESSKLEDLLRKVRAKETK 237
+RDT D +H+ V +Y DI + E + + FE+S + D +R +
Sbjct: 28 IRDTDDLHDAIHMAADNA--VPHYYADIFSVMASEGIDLEFEDSGLMPDTKDVIRILQA- 84
Query: 238 KRVLSRLKFKLGEDVVLMVGIY 259
R+ +L L ED ++ Y
Sbjct: 85 -RIYEQLTIDLWEDAEDLLNEY 105
>gi|1688301|sp|Q09088|OSA6_BORBU OUTER SURFACE PROTEIN A PRECURSOR.
Length = 273
Score = 29.7 bits (71), Expect = 9.1
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 12/123 (9%)
Query: 219 EESSKLEDLLRKVRAKETKKRVLSR--LKFKLGED-VVLMV--GIYNLVQKANKPFPVRL 273
E +KLE K K VL L+ K+ D V L V G L ++ K V +
Sbjct: 140 ENGTKLEYTEMKSDGTGKAKEVLKNFTLEGKVANDKVTLEVKEGTVTLSKEIAKSGEVTV 199
Query: 274 -YRETNEPVKTK-TRTFNVNTGSLLLPSDTKRSLTYGTRQIVLEKEETEELKRFDEPGLI 331
+TN TK T ++ T +L + ++K+ T Q+V K++T ++++D G
Sbjct: 200 ALNDTNTTQATKKTGAWDSKTSTLTISVNSKK-----TTQLVFTKQDTITVQKYDSAGTN 254
Query: 332 LMG 334
L G
Sbjct: 255 LEG 257
Database: sp35
Posted date: Sep 21, 2000 12:20 AM
Number of letters in database: 25,083,768
Number of sequences in database: 69,113
Lambda K H
0.317 0.136 0.382
Gapped
Lambda K H
0.239 0.0270 0.100
Matrix: BLOSUM62
Gap Penalties: Existence: 7, Extension: 2
Number of Hits to DB: 28,603,233
Number of Sequences: 69113
Number of extensions: 1213732
Number of successful extensions: 3300
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 3293
Number of HSP's gapped (non-prelim): 17
length of query: 595
length of database: 25,083,768
effective HSP length: 122
effective length of query: 473
effective length of database: 16,651,982
effective search space: 7876387486
effective search space used: 7876387486
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 43 (14.8 bits)
X3: 72 (24.8 bits)
S1: 41 (21.6 bits)
S2: 71 (29.7 bits)
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