BLASTP 2.0MP-WashU [04-Sep-2000]
Reference: Gish, W. (1996-2000) http://blast.wustl.edu
Query= gi|730028|sp|P40692|MLH1_HUMAN MUTL PROTEIN HOMOLOG 1 (DNA MISMATCH
REPAIR PROTEIN MLH1)
(756 letters)
Database: SWISS-PROT Release 35.0
69,113 sequences; 25,083,768 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
sp|P40692|MLH1_HUMAN MUTL PROTEIN HOMOLOG 1 (DNA MISMATCH... 3735 0.0 1
sp|P38920|MLH1_YEAST MUTL PROTEIN HOMOLOG 1 (DNA MISMATCH... 675 1.1e-138 8
sp|P23367|MUTL_ECOLI DNA MISMATCH REPAIR PROTEIN MUTL. 409 2.5e-57 2
sp|P14161|MUTL_SALTY DNA MISMATCH REPAIR PROTEIN MUTL. 399 2.1e-55 4
sp|P44494|MUTL_HAEIN DNA MISMATCH REPAIR PROTEIN MUTL. 452 2.6e-52 2
sp|P49850|MUTL_BACSU DNA MISMATCH REPAIR PROTEIN MUTL. 279 1.5e-46 4
sp|P14160|HEXB_STRPN DNA MISMATCH REPAIR PROTEIN HEXB. 261 9.0e-45 5
sp|P54278|PMS2_HUMAN PMS1 PROTEIN HOMOLOG 2 (DNA MISMATCH... 278 1.3e-34 7
sp|P54279|PMS2_MOUSE PMS1 PROTEIN HOMOLOG 2 (DNA MISMATCH... 273 2.5e-33 5
sp|P54280|PMS1_SCHPO DNA MISMATCH REPAIR PROTEIN PMS1. 242 4.7e-33 6
sp|P54277|PMS1_HUMAN PMS1 PROTEIN HOMOLOG 1 (DNA MISMATCH... 268 2.9e-32 3
sp|P14242|PMS1_YEAST DNA MISMATCH REPAIR PROTEIN PMS1. 251 1.0e-28 4
sp|Q07737|CHVG_AGRTU SENSOR PROTEIN CHVG (EC 2.7.3.-). 80 0.077 1
sp|P06980|GSH1_ECOLI GLUTAMATE--CYSTEINE LIGASE (EC 6.3.2... 71 0.64 1
sp|P08739|NU5M_CHLRE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN... 70 0.77 1
sp|P43984|Y318_HAEIN HYPOTHETICAL PROTEIN HI0318. 58 0.81 2
sp|P80150|HRC2_XANCV HRPC2 PROTEIN. 69 0.88 2
sp|P23557|XYN4_CALSA PUTATIVE ENDO-1,4-BETA-XYLANASE (EC ... 65 0.98 1
sp|P02239|LGB1_LUPLU LEGHEMOGLOBIN I. 62 0.98 1
sp|P71690|YR39_MYCTU HYPOTHETICAL 32.9 KD PROTEIN CY21B4.39. 64 0.994 1
sp|P08640|AMYH_YEAST GLUCOAMYLASE S1/S2 PRECURSOR (EC 3.2... 69 0.996 1
sp|P40758|YCBA_BACSU HYPOTHETICAL SENSOR-LIKE HISTIDINE K... 57 0.997 1
sp|P15522|WHEP_CAMDR WHEY PROTEIN. 58 0.9998 1
>sp|P40692|MLH1_HUMAN MUTL PROTEIN HOMOLOG 1 (DNA MISMATCH REPAIR PROTEIN
MLH1).
Length = 756
Score = 3735 (1705.6 bits), Expect = 0.0, P = 0.0
Identities = 730/756 (96%), Positives = 730/756 (96%)
Query: 1 MSFVAGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQ 60
MSFVAGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQ
Sbjct: 1 MSFVAGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQ 60
Query: 61 IQDNGTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTA 120
IQDNGTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTA
Sbjct: 61 IQDNGTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTA 120
Query: 121 DGKCAYRASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVV 180
DGKCAYRASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVV
Sbjct: 121 DGKCAYRASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVV 180
Query: 181 GRYSVHNAGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGCEDKTLAF 240
GRYSVHNAGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGCEDKTLAF
Sbjct: 181 GRYSVHNAGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGCEDKTLAF 240
Query: 241 KMNGYISNANYSVKKCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISP 300
KMNGYISNANYSVKKCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISP
Sbjct: 241 KMNGYISNANYSVKKCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISP 300
Query: 301 QNVDVNVHPTKHEVHFLHEESILERVQQHIESKLLGSNSSRMYFTQTLLPGLAGPSGEMV 360
QNVDVNVHPTKHEVHFLHEESILERVQQHIESKLLGSNSSRMYFTQTLLPGLAGPSGEMV
Sbjct: 301 QNVDVNVHPTKHEVHFLHEESILERVQQHIESKLLGSNSSRMYFTQTLLPGLAGPSGEMV 360
Query: 361 KXXXXXXXXXXXXXXDKVYAHQMVRTDSREQKLDAFLQPLSKPLSSQPQAIVTEDKTDIS 420
K DKVYAHQMVRTDSREQKLDAFLQPLSKPLSSQPQAIVTEDKTDIS
Sbjct: 361 KSTTSLTSSSTSGSSDKVYAHQMVRTDSREQKLDAFLQPLSKPLSSQPQAIVTEDKTDIS 420
Query: 421 SGRARQQDEEMLELPAPAEVAAKNQSLEGDTTKGTSEMSEKRGPTSSNPRKRHRXXXXXX 480
SGRARQQDEEMLELPAPAEVAAKNQSLEGDTTKGTSEMSEKRGPTSSNPRKRHR
Sbjct: 421 SGRARQQDEEMLELPAPAEVAAKNQSLEGDTTKGTSEMSEKRGPTSSNPRKRHREDSDVE 480
Query: 481 XXXXXXRKEMTAACTPRRRIINLTSVLSLQEEINEQGHEVLREMLHNHSFVGCVNPQWAL 540
RKEMTAACTPRRRIINLTSVLSLQEEINEQGHEVLREMLHNHSFVGCVNPQWAL
Sbjct: 481 MVEDDSRKEMTAACTPRRRIINLTSVLSLQEEINEQGHEVLREMLHNHSFVGCVNPQWAL 540
Query: 541 AQHQTKLYLLNTTKLSEELFYQILIYDFANFGVLRLSEPAPLFDLAMLALDSPESGWTEE 600
AQHQTKLYLLNTTKLSEELFYQILIYDFANFGVLRLSEPAPLFDLAMLALDSPESGWTEE
Sbjct: 541 AQHQTKLYLLNTTKLSEELFYQILIYDFANFGVLRLSEPAPLFDLAMLALDSPESGWTEE 600
Query: 601 DGPKEGLAEYIVEFLKKKAEMLADYFSLEIDEEGNLIGLPLLIDNYVPPLEGLPIFILRL 660
DGPKEGLAEYIVEFLKKKAEMLADYFSLEIDEEGNLIGLPLLIDNYVPPLEGLPIFILRL
Sbjct: 601 DGPKEGLAEYIVEFLKKKAEMLADYFSLEIDEEGNLIGLPLLIDNYVPPLEGLPIFILRL 660
Query: 661 ATEVNWDEEKECFESLSKECAMFYSIRKQYISEESTLSGQQSEVPGSIPNSWKWTVEHIV 720
ATEVNWDEEKECFESLSKECAMFYSIRKQYISEESTLSGQQSEVPGSIPNSWKWTVEHIV
Sbjct: 661 ATEVNWDEEKECFESLSKECAMFYSIRKQYISEESTLSGQQSEVPGSIPNSWKWTVEHIV 720
Query: 721 YKALRSHILPPKHFTEDGNILQLANLPDLYKVFERC 756
YKALRSHILPPKHFTEDGNILQLANLPDLYKVFERC
Sbjct: 721 YKALRSHILPPKHFTEDGNILQLANLPDLYKVFERC 756
>sp|P38920|MLH1_YEAST MUTL PROTEIN HOMOLOG 1 (DNA MISMATCH REPAIR PROTEIN
MLH1).
Length = 769
Score = 675 (310.6 bits), Expect = 1.1e-138, Sum P(8) = 1.1e-138
Identities = 127/222 (57%), Positives = 170/222 (76%)
Query: 8 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTG 67
I+ LD +VVN+IAAGE+I P NA+KEM+EN +DA +T I ++VKEGG+K++QI DNG+G
Sbjct: 5 IKALDASVVNKIAAGEIIISPVNALKEMMENSIDANATMIDILVKEGGIKVLQITDNGSG 64
Query: 68 IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 127
I K DL I+CERFTTSKLQ FEDL+ I TYGFRGEALASISHVA VT+TTK + +CA+R
Sbjct: 65 INKADLPILCERFTTSKLQKFEDLSQIQTYGFRGEALASISHVARVTVTTKVKEDRCAWR 124
Query: 128 ASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVHN 187
SY++GK+ PKP AG GT I VEDLF+NI +R +AL++ ++EY KIL+VVGRY++H+
Sbjct: 125 VSYAEGKMLESPKPVAGKDGTTILVEDLFFNIPSRLRALRSHNDEYSKILDVVGRYAIHS 184
Query: 188 AGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELI 229
I FS KK G++ + P+ + D IR++F +V+ LI
Sbjct: 185 KDIGFSCKKFGDSNYSLSVKPSYTVQDRIRTVFNKSVASNLI 226
Score = 215 (100.9 bits), Expect = 1.1e-138, Sum P(8) = 1.1e-138
Identities = 39/85 (45%), Positives = 58/85 (68%)
Query: 259 LLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEVHFLH 318
+ FIN+RLV LR+A+ +VY+ YLPK PF+YL + I P VDVNVHPTK EV FL
Sbjct: 259 IFFINNRLVTCDLLRRALNSVYSNYLPKGNRPFIYLGIVIDPAAVDVNVHPTKREVRFLS 318
Query: 319 EESILERVQQHIESKLLGSNSSRMY 343
++ I+E++ + ++L ++SR +
Sbjct: 319 QDEIIEKIANQLHAELSAIDTSRTF 343
Score = 136 (64.9 bits), Expect = 1.1e-138, Sum P(8) = 1.1e-138
Identities = 40/121 (33%), Positives = 58/121 (47%)
Query: 636 LIGLPLLIDNYVPPLEGLPIFILRLATEVNWDEEKECFESLSKECAMFYSIRKQYISEES 695
L LPLL+ Y+P L LP FI RL EV+W++E+EC + + +E A+ Y + S
Sbjct: 649 LKSLPLLLKGYIPSLVKLPFFIYRLGKEVDWEDEQECLDGILREIALLYIPDMVPKVDTS 708
Query: 696 TLSGQQSEVPGSIPNSWKWTVEHIVYKALRSHILPPKHFTEDGNILQLANLPDLYKVFER 755
S + E I + +++++ANLPDLYKVFER
Sbjct: 709 DASLSEDEKAQFINRKEHISSLLEHVLFPCIKRRFLAPRHILKDVVEIANLPDLYKVFER 768
Query: 756 C 756
C
Sbjct: 769 C 769
Score = 93 (45.3 bits), Expect = 1.1e-138, Sum P(8) = 1.1e-138
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 539 ALAQHQTKLYLLNTTKLSEELFYQILIYDFANFGVLRLSEPAPLFDLAMLAL 590
A QH KL+L++ + ELFYQI + DFANFG + L D+ + L
Sbjct: 549 AAIQHDLKLFLIDYGSVCYELFYQIGLTDFANFGKINLQSTNVSDDIVLYNL 600
Score = 76 (37.6 bits), Expect = 1.1e-138, Sum P(8) = 1.1e-138
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 501 INLTSVLSLQEEINEQGHEVLREMLHNHSFVGCVNPQWALAQHQTKLYL 549
+NLTS+ L+E++++ H L ++ N ++VG V+ + LA Q L L
Sbjct: 509 VNLTSIKKLREKVDDSIHRELTDIFANLNYVGVVDEERRLAAIQHDLKL 557
Score = 42 (22.1 bits), Expect = 1.1e-138, Sum P(8) = 1.1e-138
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 609 EYIVEFLKKKAEMLADYFSLEIDEEG 634
E I+ + + ML +Y+S+E+ +G
Sbjct: 614 EKIISKIWDMSSMLNEYYSIELVNDG 639
Score = 39 (20.7 bits), Expect = 7.9e-22, Sum P(5) = 7.9e-22
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 411 IVTEDKTDISSGRARQQDEEMLELPAP 437
+ T+ K D + R + +MLE P P
Sbjct: 112 VTTKVKEDRCAWRVSYAEGKMLESPKP 138
Score = 37 (19.8 bits), Expect = 1.0e-131, Sum P(6) = 1.0e-131
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 503 LTSVLSLQEEINEQGHEVLREM 524
+TS LS ++ N +G R++
Sbjct: 409 ITSFLSSSQQFNFEGSSTKRQL 430
Score = 36 (19.3 bits), Expect = 1.1e-138, Sum P(8) = 1.1e-138
Identities = 6/17 (35%), Positives = 13/17 (76%)
Query: 381 HQMVRTDSREQKLDAFL 397
+++VR D+ + K+ +FL
Sbjct: 397 NKLVRIDASQAKITSFL 413
Score = 36 (19.3 bits), Expect = 7.1e-46, Sum P(7) = 7.1e-46
Identities = 9/40 (22%), Positives = 20/40 (50%)
Query: 14 TVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKE 53
TV N+ A +I + ++++ +D K ++ I K+
Sbjct: 215 TVFNKSVASNLITFHISKVEDLNLESVDGKVCNLNFISKK 254
Score = 34 (18.4 bits), Expect = 1.1e-138, Sum P(8) = 1.1e-138
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 242 MNGYISNANYSVKKCIFLLF 261
++G + N N+ KK I +F
Sbjct: 241 VDGKVCNLNFISKKSISPIF 260
Score = 34 (18.4 bits), Expect = 2.2e-106, Sum P(5) = 2.2e-106
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 209 NASTVDNIRSIFGNAVSRELIEI 231
N +++ +R +++ REL +I
Sbjct: 510 NLTSIKKLREKVDDSIHRELTDI 532
>sp|P23367|MUTL_ECOLI DNA MISMATCH REPAIR PROTEIN MUTL.
Length = 615
Score = 409 (189.4 bits), Expect = 2.5e-57, Sum P(2) = 2.5e-57
Identities = 83/201 (41%), Positives = 129/201 (64%)
Query: 8 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTG 67
I+ L + N+IAAGEV++RPA+ +KE++EN LDA +T I + ++ GG KLI+I+DNG G
Sbjct: 3 IQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCG 62
Query: 68 IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 127
I+K++L + R TSK+ S +DL +I + GFRGEALASIS V+ +T+T++TA+ + A++
Sbjct: 63 IKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEAWQ 122
Query: 128 ASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVHN 187
A + KP A GT + V DLFYN RRK L+ E+ I E++ R ++
Sbjct: 123 AYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIALAR 182
Query: 188 AGISFSVKKQGETVADVRTLP 208
++ ++ G+ V R +P
Sbjct: 183 FDVTINLSHNGKIVRQYRAVP 203
Score = 115 (55.3 bits), Expect = 2.5e-57, Sum P(2) = 2.5e-57
Identities = 26/74 (35%), Positives = 36/74 (48%)
Query: 261 FINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEE 320
++N R++ + AI L + P L LEI P VDVNVHP KHEV F
Sbjct: 257 YVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVDVNVHPAKHEVRFHQSR 316
Query: 321 SILERVQQHIESKL 334
+ + + Q + S L
Sbjct: 317 LVHDFIYQGVLSVL 330
>sp|P14161|MUTL_SALTY DNA MISMATCH REPAIR PROTEIN MUTL.
Length = 618
Score = 399 (184.8 bits), Expect = 2.1e-55, Sum P(4) = 2.1e-55
Identities = 81/200 (40%), Positives = 127/200 (63%)
Query: 8 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTG 67
I+ L + N+IAAGEV++RPA+ +KE++EN LDA +T + + ++ GG KLI+I+DNG G
Sbjct: 3 IQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRVDIDIERGGAKLIRIRDNGCG 62
Query: 68 IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 127
I+KE+L + R TSK+ S +DL +I + GFRGEALASIS V+ +T+T++TA+ A++
Sbjct: 63 IKKEELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQAEAWQ 122
Query: 128 ASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVHN 187
A + KP A GT + V DLFYN RRK ++ E+ I E++ R ++
Sbjct: 123 AYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFNHIDEIIRRIALAR 182
Query: 188 AGISFSVKKQGETVADVRTL 207
++ ++ G+ V R +
Sbjct: 183 FDVTLNLSHNGKLVRQYRAV 202
Score = 115 (55.3 bits), Expect = 2.1e-55, Sum P(4) = 2.1e-55
Identities = 26/74 (35%), Positives = 36/74 (48%)
Query: 261 FINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEE 320
++N R++ + AI L + P L LEI P VDVNVHP KHEV F
Sbjct: 257 YVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVDVNVHPAKHEVRFHQSR 316
Query: 321 SILERVQQHIESKL 334
+ + + Q + S L
Sbjct: 317 LVHDFIYQGVLSVL 330
Score = 36 (19.3 bits), Expect = 2.1e-55, Sum P(4) = 2.1e-55
Identities = 5/8 (62%), Positives = 8/8 (100%)
Query: 535 NPQWALAQ 542
+PQW++AQ
Sbjct: 572 HPQWSMAQ 579
Score = 36 (19.3 bits), Expect = 2.1e-55, Sum P(4) = 2.1e-55
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 395 AFLQPLSKPLSSQPQAIVTEDKTDISSGRARQQDEEML 432
A L P P+ +QP I K A Q+ + +L
Sbjct: 473 AQLTPGQSPVCAQPLLIPLRLKVSADEKAALQKAQSLL 510
>sp|P44494|MUTL_HAEIN DNA MISMATCH REPAIR PROTEIN MUTL.
Length = 629
Score = 452 (209.0 bits), Expect = 2.6e-52, Sum P(2) = 2.6e-52
Identities = 107/327 (32%), Positives = 172/327 (52%)
Query: 8 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTG 67
I+ L + N+IAAGEV++RPA+ +KE++EN LDA + IQ+ ++ GG LI+I+DNG G
Sbjct: 3 IKILSPQLANQIAAGEVVERPASVVKELVENSLDAGANKIQIDIENGGANLIRIRDNGCG 62
Query: 68 IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 127
I KE+L + R TSK+ +DL +I + GFRGEALASIS V+ +T+T++T + A++
Sbjct: 63 IPKEELSLALARHATSKIADLDDLEAILSLGFRGEALASISSVSRLTLTSRTEEQTEAWQ 122
Query: 128 ASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVHN 187
++ KP + GT + V +LF+N RRK L+ E+ I EV+ R ++
Sbjct: 123 VYAQGRDMETTIKPASHPVGTTVEVANLFFNTPARRKFLRTDKTEFSHIDEVIRRIALTK 182
Query: 188 AGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGCEDKTLAFKMNGYIS 247
+F++ G+ + R + + + +
Sbjct: 183 FNTAFTLTHNGKIIRQYRPAEAINQQLKRVAAICGDDFVKNALRIEWKHDDLHLSGWVAT 242
Query: 248 NANYSVKKCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNV 307
+ + +IN R+V + AI YA YLP + +P L ++++P +VDVNV
Sbjct: 243 PNFSRTQNDLSYCYINGRMVRDKVISHAIRQAYAQYLPTDAYPAFVLFIDLNPHDVDVNV 302
Query: 308 HPTKHEVHFLHEESILERVQQHIESKL 334
HPTKHEV F + I + + + I L
Sbjct: 303 HPTKHEVRFHQQRLIHDFIYEGISHAL 329
Score = 34 (18.4 bits), Expect = 2.6e-52, Sum P(2) = 2.6e-52
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 331 ESKLLGSNSSRMYFTQTLLP 350
E++ L + ++R FTQ L P
Sbjct: 600 ETERLLTQTNRTAFTQLLKP 619
>sp|P49850|MUTL_BACSU DNA MISMATCH REPAIR PROTEIN MUTL.
Length = 627
Score = 279 (130.1 bits), Expect = 1.5e-46, Sum P(4) = 1.5e-46
Identities = 53/113 (46%), Positives = 78/113 (69%)
Query: 10 RLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTGIR 69
+L + + N+IAAGEV++RPA+ +KE++EN +DA ST I++ ++E GL I++ DNG G+
Sbjct: 6 QLSDELSNKIAAGEVVERPASVVKELVENAIDADSTVIEIDIEEAGLASIRVLDNGEGME 65
Query: 70 KEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADG 122
ED R TSK++ DL + T GFRGEAL SI+ V+H+ ITT T +G
Sbjct: 66 NEDCKRAFRRHATSKIKDENDLFRVRTLGFRGEALPSIASVSHLEITTSTGEG 118
Score = 113 (54.4 bits), Expect = 1.5e-46, Sum P(4) = 1.5e-46
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 262 INHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEES 321
+N R +++ L KA+ Y LP HP ++ + + P VDVNVHP+K EV E
Sbjct: 253 VNGRYIKNFPLVKAVHEGYHTLLPIGRHPITFIEITMDPILVDVNVHPSKLEVRLSKETE 312
Query: 322 ILERVQQHIE 331
+ + ++ I+
Sbjct: 313 LHDLIRDGIK 322
Score = 91 (44.4 bits), Expect = 1.5e-46, Sum P(4) = 1.5e-46
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 143 AGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVHNAGISFSVKKQGETV 201
+ +GT+I V +LF+N R K +K E G I +VV R ++ + +S ++ G+ +
Sbjct: 137 SSRKGTEIVVSNLFFNTPARLKYMKTVHTELGNITDVVNRIALAHPEVSIRLRHHGKNL 195
Score = 44 (23.0 bits), Expect = 1.5e-46, Sum P(4) = 1.5e-46
Identities = 8/32 (25%), Positives = 19/32 (59%)
Query: 531 VGCVNPQWALAQHQTKLYLLNTTKLSEELFYQ 562
+G ++ + LAQ++ LY+++ E + Y+
Sbjct: 442 IGQMHGTYILAQNENGLYIIDQHAAQERIKYE 473
Score = 34 (18.4 bits), Expect = 3.2e-13, Sum P(4) = 3.2e-13
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 103 ALASISHVAHVTITTKTADGK 123
++AS+SH+ T T + A K
Sbjct: 102 SIASVSHLEITTSTGEGAGTK 122
>sp|P14160|HEXB_STRPN DNA MISMATCH REPAIR PROTEIN HEXB.
Length = 649
Score = 261 (121.9 bits), Expect = 9.0e-45, Sum P(5) = 9.0e-45
Identities = 53/110 (48%), Positives = 77/110 (70%)
Query: 8 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTG 67
I L E + N+IAAGEVI+RPA+ KE++EN +DA S+ I + ++E GLK +QI DNG G
Sbjct: 4 IIELPEMLANQIAAGEVIERPASVCKELVENAIDAGSSQIIIEIEEAGLKKVQITDNGHG 63
Query: 68 IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITT 117
I +++++ R TSK+++ DL I T GFRGEAL SI+ V+ +T+ T
Sbjct: 64 IAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLT 113
Score = 115 (55.3 bits), Expect = 9.0e-45, Sum P(5) = 9.0e-45
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 260 LFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHE 319
LFIN R +++ L +AI + + L P + + I P DVNVHPTK EV E
Sbjct: 252 LFINGRYIKNFLLNRAILDGFGSKLMVGRFPLAVIHIHIDPYLADVNVHPTKQEVRISKE 311
Query: 320 ESILERVQQHIESKL 334
+ ++ V + I + L
Sbjct: 312 KELMTLVSEAIANSL 326
Score = 103 (49.9 bits), Expect = 9.0e-45, Sum P(5) = 9.0e-45
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 141 PCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVHNAGISFSVKKQGE 199
P GT++ VEDLF+N R K +K+ E I+++V R + + ISFS+ G+
Sbjct: 136 PATSPVGTKVCVEDLFFNTPARLKYMKSQQAELSHIIDIVNRLGLAHPEISFSLISDGK 194
Score = 36 (19.3 bits), Expect = 9.0e-45, Sum P(5) = 9.0e-45
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 565 IYDFANFGVLRLSEPAPLFD 584
I++F LRL E PL +
Sbjct: 504 IFEFPADDALRLKERMPLLE 523
Score = 36 (19.3 bits), Expect = 9.0e-45, Sum P(5) = 9.0e-45
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 530 FVGCVNPQWALAQHQTKLYLLNTTKLSEELFYQ 562
F G ++ + AQ + LY+++ E + Y+
Sbjct: 451 FFGQMHGTYLFAQGRDGLYIIDQHAAQERVKYE 483
>sp|P54278|PMS2_HUMAN PMS1 PROTEIN HOMOLOG 2 (DNA MISMATCH REPAIR PROTEIN
PMS2).
Length = 862
Score = 278 (129.6 bits), Expect = 1.3e-34, Sum P(7) = 1.3e-34
Identities = 57/160 (35%), Positives = 96/160 (60%)
Query: 5 AGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDN 64
A I+ +D V++I +G+V+ + A+KE++EN LDA +T+I + +K+ G+ LI++ DN
Sbjct: 12 AKAIKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDN 71
Query: 65 GTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKC 124
G G+ +E+ + + + TSK+Q F DL + T+GFRGEAL+S+ ++ VTI+T A K
Sbjct: 72 GCGVEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHASAKV 131
Query: 125 AYRASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRK 164
R + P +GT ++V+ LF + R K
Sbjct: 132 GTRLMFDHNGKIIQKTPYPRPRGTTVSVQQLFSTLPVRHK 171
Score = 67 (33.5 bits), Expect = 1.3e-34, Sum P(7) = 1.3e-34
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 286 KNTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEESIL 323
++ +PF+ L++ + + VD+NV P K ++ E+ +L
Sbjct: 315 RHQYPFVVLNISVDSECVDINVTPDKRQILLQEEKLLL 352
Score = 55 (28.0 bits), Expect = 1.3e-34, Sum P(7) = 1.3e-34
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 167 KNPSEEYGKILEVVGRYSVHNAGISFSVKKQ 197
+N +EY K+++V+ Y + +AGI S Q
Sbjct: 175 RNIKKEYAKMVQVLHAYCIISAGIRVSCTNQ 205
Score = 41 (21.6 bits), Expect = 4.3e-31, Sum P(6) = 4.3e-31
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 274 KAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEESIL 323
K V Y N H + ++ L IS + V+++ T + L +E L
Sbjct: 301 KVCRLVNEVYHMYNRHQYPFVVLNISVDSECVDINVTPDKRQILLQEEKL 350
Score = 40 (21.1 bits), Expect = 1.3e-34, Sum P(7) = 1.3e-34
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 398 QPLSKPLSSQPQAIVTEDKTDISSGRARQ 426
+P+ + P E+K D+S R R+
Sbjct: 394 KPMVEKQDQSPSLRTGEEKKDVSISRLRE 422
Score = 39 (20.7 bits), Expect = 1.3e-34, Sum P(7) = 1.3e-34
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 197 QGETVADVRTLPNASTVDNIRSIFGNAVSRELI 229
QG+ V T + S +NI S+FG + LI
Sbjct: 208 QGKRQPVVCTGGSPSIKENIGSVFGQKQLQSLI 240
Score = 34 (18.4 bits), Expect = 1.3e-34, Sum P(7) = 1.3e-34
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 261 FINHRLVESTSLRKAIETVYAAY 283
FIN R + + + + VY Y
Sbjct: 291 FINRRPCDPAKVCRLVNEVYHMY 313
Score = 34 (18.4 bits), Expect = 1.3e-34, Sum P(7) = 1.3e-34
Identities = 13/49 (26%), Positives = 20/49 (40%)
Query: 550 LNTTKLSEELFYQILIYDFANFGVLRLSEPAPLFDLAMLALDSPESGWT 598
LN T ++E + + L N + E AP+ + A L WT
Sbjct: 729 LNLTAVNEAVLIENLEIFRKNGFDFVIDENAPVTERAKLISLPTSKNWT 777
>sp|P54279|PMS2_MOUSE PMS1 PROTEIN HOMOLOG 2 (DNA MISMATCH REPAIR PROTEIN
PMS2).
Length = 859
Score = 273 (127.4 bits), Expect = 2.5e-33, Sum P(5) = 2.5e-33
Identities = 57/160 (35%), Positives = 95/160 (59%)
Query: 5 AGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDN 64
A I+ +D V++I +G+VI + A+KE+IEN +DA +T+I + +K+ G+ LI++ DN
Sbjct: 12 AKAIKPIDGKSVHQICSGQVILSLSTAVKELIENSVDAGATTIDLRLKDYGVDLIEVSDN 71
Query: 65 GTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKC 124
G G+ +E+ + + + TSK+Q F DL + T+GFRGEAL+S+ ++ VTI+T
Sbjct: 72 GCGVEEENFEGLALKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHGSASV 131
Query: 125 AYRASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRK 164
R + P +GT ++V+ LFY + R K
Sbjct: 132 GTRLVFDHNGKITQKTPYPRPKGTTVSVQHLFYTLPVRYK 171
Score = 66 (33.0 bits), Expect = 2.5e-33, Sum P(5) = 2.5e-33
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 286 KNTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEESIL 323
++ +PF+ L++ + + VD+NV P K ++ E+ +L
Sbjct: 315 RHQYPFVVLNVSVDSECVDINVTPDKRQILLQEEKLLL 352
Score = 54 (27.5 bits), Expect = 2.5e-33, Sum P(5) = 2.5e-33
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 167 KNPSEEYGKILEVVGRYSVHNAGISFSVKKQ 197
+N +EY K+++V+ Y + +AG+ S Q
Sbjct: 175 RNIKKEYSKMVQVLQAYCIISAGVRVSCTNQ 205
Score = 42 (22.1 bits), Expect = 2.5e-33, Sum P(5) = 2.5e-33
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 197 QGETVADVRTLPNASTVDNIRSIFGNAVSRELI 229
QG+ A V T + +NI S+FG + LI
Sbjct: 208 QGKRHAVVCTSGTSGMKENIGSVFGQKQLQSLI 240
Score = 36 (19.3 bits), Expect = 2.2e-29, Sum P(5) = 2.2e-29
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 287 NTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEESIL 323
N H + ++ L +S + V+++ T + L +E L
Sbjct: 314 NRHQYPFVVLNVSVDSECVDINVTPDKRQILLQEEKL 350
Score = 35 (18.9 bits), Expect = 2.5e-33, Sum P(5) = 2.5e-33
Identities = 8/11 (72%), Positives = 8/11 (72%)
Query: 459 SEKRGPTSSNP 469
SEKRG SS P
Sbjct: 449 SEKRGVLSSYP 459
Score = 35 (18.9 bits), Expect = 2.5e-33, Sum P(5) = 2.5e-33
Identities = 13/49 (26%), Positives = 20/49 (40%)
Query: 550 LNTTKLSEELFYQILIYDFANFGVLRLSEPAPLFDLAMLALDSPESGWT 598
LN T ++E + + L N + E AP+ + A L WT
Sbjct: 726 LNLTAVNEAVLIENLEIFRKNGFDFVIDEDAPVTERAKLISLPTSKNWT 774
>sp|P54280|PMS1_SCHPO DNA MISMATCH REPAIR PROTEIN PMS1.
Length = 794
Score = 242 (113.2 bits), Expect = 4.7e-33, Sum P(6) = 4.7e-33
Identities = 46/112 (41%), Positives = 77/112 (68%)
Query: 8 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTG 67
++ +D V++I +G+VI A+A+KE++EN LD+ +T+I++ K G+ I++ DNG+G
Sbjct: 4 VKPIDANTVHKICSGQVITDVASAVKELVENSLDSGATTIEIRFKNYGINSIEVVDNGSG 63
Query: 68 IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKT 119
I D + + ++ TSK+ FEDL ++ T+GFRGEAL+S+ V V I+T T
Sbjct: 64 IDAGDYESIGKKHFTSKITDFEDLEALQTFGFRGEALSSLCAVGQVIISTAT 115
Score = 78 (38.5 bits), Expect = 4.7e-33, Sum P(6) = 4.7e-33
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 290 PFLYLSLEISPQNVDVNVHPTKHEVHFLHEESILERVQQHIES 332
PF ++L I+ +D+NV P K V E+SI+E ++ +++
Sbjct: 287 PFFAINLRITNGTIDINVSPDKKSVFLSEEDSIIEFIKNSLQN 329
Score = 52 (26.6 bits), Expect = 4.7e-33, Sum P(6) = 4.7e-33
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 146 QGTQITVEDLFYNIATRRKALK 167
+GT + V DLF + RRK L+
Sbjct: 143 RGTSVMVNDLFCTLPVRRKLLE 164
Score = 52 (26.6 bits), Expect = 4.7e-33, Sum P(6) = 4.7e-33
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 259 LLFINHRLVESTSLRKAIETVYAAY 283
+LFIN RLV + + I+ V+ Y
Sbjct: 257 MLFINRRLVNLPKIARVIQEVFKPY 281
Score = 44 (23.0 bits), Expect = 4.7e-33, Sum P(6) = 4.7e-33
Identities = 13/54 (24%), Positives = 22/54 (40%)
Query: 176 ILEVVGRYSVHNAGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELI 229
+L+ S + + + K + + T N NI ++FG VS LI
Sbjct: 177 LLQAYATISTNKRFMVYHQTKNSGKLLQLSTNSNKDMKLNIMNVFGTKVSSSLI 230
Score = 38 (20.2 bits), Expect = 2.8e-32, Sum P(6) = 2.8e-32
Identities = 12/53 (22%), Positives = 21/53 (39%)
Query: 162 RRKALKNPSEEYGKILEVVGRYSVHNAGISFSVKKQGETVADVRTLPNASTVD 214
R+ KN E+ K + ++ Y+ + F V Q + + L S D
Sbjct: 160 RKLLEKNYKREFSKAISLLQAYATISTNKRFMVYHQTKNSGKLLQLSTNSNKD 212
Score = 36 (19.3 bits), Expect = 0.021, Sum P(4) = 0.021
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 21 AGEVIQRPANAIKEMIENCLDAKSTSI 47
+G+++Q N+ K+M N ++ T +
Sbjct: 199 SGKLLQLSTNSNKDMKLNIMNVFGTKV 225
Score = 35 (18.9 bits), Expect = 1.9e-27, Sum P(5) = 1.9e-27
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 297 EISPQNVDVNVHPTKHEVHFL 317
+IS +N + +++ T H+ FL
Sbjct: 589 DISDENQEDHLNLTVHKADFL 609
Score = 34 (18.4 bits), Expect = 4.7e-33, Sum P(6) = 4.7e-33
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 445 QSLEGDTTKGTSEMSEKRGPTSSNPRKR 472
+ L+ D+ + +S ++EK +S +K+
Sbjct: 421 ERLQKDSMRRSSPLNEKVTASSERMKKK 448
>sp|P54277|PMS1_HUMAN PMS1 PROTEIN HOMOLOG 1 (DNA MISMATCH REPAIR PROTEIN
PMS1).
Length = 932
Score = 268 (125.1 bits), Expect = 2.9e-32, Sum P(3) = 2.9e-32
Identities = 57/157 (36%), Positives = 92/157 (58%)
Query: 8 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTG 67
+++L V +++ ++I + +KE+IEN LDA +TS+ V ++ G I+++DNG G
Sbjct: 1 MKQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEG 60
Query: 68 IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 127
I+ D ++ ++ TSK+ S EDL +++TYGFRGEAL SI +A V ITT+TA + +
Sbjct: 61 IKAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTRTAADNFSTQ 120
Query: 128 ASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRK 164
KP QGT +T LF N+ R++
Sbjct: 121 YVLDGSGHILSQKPSHLGQGTTVTALRLFKNLPVRKQ 157
Score = 68 (33.9 bits), Expect = 2.9e-32, Sum P(3) = 2.9e-32
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 289 HPFLYLSLEISPQNVDVNVHPTKHEVHFLHEESIL 323
+P +L +++ +VDVN+ P K +V ++ES+L
Sbjct: 292 YPVFFLKIDVPTADVDVNLTPDKSQVLLQNKESVL 326
Score = 53 (27.1 bits), Expect = 2.9e-32, Sum P(3) = 2.9e-32
Identities = 18/77 (23%), Positives = 35/77 (45%)
Query: 642 LIDNYVPPLEGLPIFILRLATEVNWDEEKECFESLSKECAMFYSIRKQYISEESTLSGQQ 701
LI+N LE + I L ++ +E+ + E +K+ + S K+ I +ES +S +
Sbjct: 590 LIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQESQMSLKD 649
Query: 702 SEVPGSIPNSWKWTVEH 718
++W +H
Sbjct: 650 GRKKIKPTSAWNLAQKH 666
Score = 38 (20.2 bits), Expect = 3.0e-30, Sum P(3) = 3.0e-30
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 536 PQWALAQHQTKLYLLNTTKLSEELFYQILI 565
P L +T++ LLN ++ E L ++ L+
Sbjct: 733 PDAWLMTSKTEVMLLNPYRVEEALLFKRLL 762
Score = 36 (19.3 bits), Expect = 5.7e-28, Sum P(3) = 5.7e-28
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 302 NVDVNVHPTKHEVH 315
NVD +V P ++++H
Sbjct: 382 NVDTSVIPFQNDMH 395
Score = 36 (19.3 bits), Expect = 5.7e-28, Sum P(3) = 5.7e-28
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 317 LHEESILERVQQHIESKLL 335
+H++ IL+ ++ H K L
Sbjct: 267 VHQKDILKLIRHHYNLKCL 285
Score = 34 (18.4 bits), Expect = 1.2e-29, Sum P(4) = 1.2e-29
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 381 HQMVRTDSREQKLDAFLQPLSKPLSSQ 407
H++ + S + KLD LQ + SQ
Sbjct: 666 HKLKTSLSNQPKLDELLQSQIEKRRSQ 692
>sp|P14242|PMS1_YEAST DNA MISMATCH REPAIR PROTEIN PMS1.
Length = 904
Score = 251 (117.3 bits), Expect = 1.0e-28, Sum P(4) = 1.0e-28
Identities = 56/187 (29%), Positives = 101/187 (54%)
Query: 8 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTG 67
I ++++ V+RI +G+VI A+KE+++N +DA + I++I K+ GL+ I+ DNG G
Sbjct: 35 IHQINDIDVHRITSGQVITDLTTAVKELVDNSIDANANQIEIIFKDYGLESIECSDNGDG 94
Query: 68 IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 127
I + + + + TSK+ F+D+A + T GFRGEAL+S+ +A +++ T T+ K
Sbjct: 95 IDPSNYEFLALKHYTSKIAKFQDVAKVQTLGFRGEALSSLCGIAKLSVITTTSPPKADKL 154
Query: 128 ASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVHN 187
G + + T + + +++ K ++ K L V+ Y++ N
Sbjct: 155 EYDMVGHITSKTTTSRNKGTTVLVSQLFHNLPVRQKEFSKTFKRQFTKCLTVIQGYAIIN 214
Query: 188 AGISFSV 194
A I FSV
Sbjct: 215 AAIKFSV 221
Score = 60 (30.3 bits), Expect = 1.0e-28, Sum P(4) = 1.0e-28
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 290 PFLYLSLEISPQNVDVNVHPTKHEVHFLHEESILE 324
P ++L+LE+ +DVNV P K + +E ++++
Sbjct: 343 PAVFLNLELPMSLIDVNVTPDKRVILLHNERAVID 377
Score = 48 (24.8 bits), Expect = 1.0e-28, Sum P(4) = 1.0e-28
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 192 FSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEI 231
+++ +G+ + T+ N+S NI S+FG R L E+
Sbjct: 222 WNITPKGKKNLILSTMRNSSMRKNISSVFGAGGMRGLEEV 261
Score = 42 (22.1 bits), Expect = 1.0e-28, Sum P(4) = 1.0e-28
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 260 LFINHRLVESTSLRKAIETVYAAY 283
+++N R VE ++L K VY +
Sbjct: 314 IYVNKRPVEYSTLLKCCNEVYKTF 337
>sp|Q07737|CHVG_AGRTU SENSOR PROTEIN CHVG (EC 2.7.3.-).
Length = 690
Score = 80 (39.4 bits), Expect = 0.080, P = 0.077
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 58 LIQIQDNGTGIRKEDLDIVCERFTTSK 84
++Q++DNG GI+ ED+D + ERF T +
Sbjct: 498 IVQVEDNGPGIQAEDIDRIFERFYTDR 524
>sp|P06980|GSH1_ECOLI GLUTAMATE--CYSTEINE LIGASE (EC 6.3.2.2)
(GAMMA-GLUTAMYLCYSTEINE SYNTHETASE) (GAMMA-ECS) (GCS).
Length = 518
Score = 71 (35.3 bits), Expect = 1.0, P = 0.64
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 150 ITVEDLFYNIATRRKALKNPSEEYGKI 176
IT DL+ +A ++A+K PSEEY KI
Sbjct: 251 ITFNDLYEYVAGLKQAIKTPSEEYAKI 277
>sp|P08739|NU5M_CHLRE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 (EC 1.6.5.3).
Length = 546
Score = 70 (34.8 bits), Expect = 1.5, P = 0.77
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 533 CVNPQWALAQHQTKLYLLNTTKLSEELFYQILIYDFANFGVLRLSEPAPLFDLAMLALDS 592
C +P +A L + T+ + +LFYQ + DF+ V + P+ +A+L LD
Sbjct: 394 CADPIADVAHTLLLLTAMLTSAYTTKLFYQCFMVDFSGSSVTPVRNVLPILAMAILLLDI 453
Query: 593 PESGW 597
W
Sbjct: 454 MLKVW 458
>sp|P43984|Y318_HAEIN HYPOTHETICAL PROTEIN HI0318.
Length = 172
Score = 58 (29.4 bits), Expect = 1.7, Sum P(2) = 0.81
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 636 LIGLPLLIDNYVPPLEGLPIFILRLATEVNWDE 668
LIGL L L GLPI++L LA + +E
Sbjct: 130 LIGLSLFCQAKYTALVGLPIYLLILAVRIKQEE 162
Score = 43 (22.5 bits), Expect = 1.7, Sum P(2) = 0.81
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 97 YGFRGEALASISHVA 111
YG R L SI+HVA
Sbjct: 37 YGKRNSTLLSIAHVA 51
>sp|P80150|HRC2_XANCV HRPC2 PROTEIN.
Length = 645
Score = 69 (34.4 bits), Expect = 2.1, Sum P(2) = 0.88
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 396 FLQPLSKPLSSQPQAIVTEDKTDISSGRARQQDEEMLELPAPAEVAAKNQSLEG 449
F PLS LS Q A++ + D + R+Q E+L LP P + +SL+G
Sbjct: 360 FASPLSMRLSPQLAALLDPARLDQAIESERRQLVELLGLPFPGIAIWQTESLQG 413
Score = 41 (21.6 bits), Expect = 2.1, Sum P(2) = 0.88
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 528 HSFVGCVNPQWALAQ 542
H FVG QW L Q
Sbjct: 453 HLFVGIQETQWMLEQ 467
>sp|P23557|XYN4_CALSA PUTATIVE ENDO-1,4-BETA-XYLANASE (EC 3.2.1.8) (XYLANASE)
(1,4-BETA-D- XYLAN XYLANOHYDROLASE) (ORF4).
Length = 312
Score = 65 (32.5 bits), Expect = 3.8, P = 0.98
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 652 GLPIFILRLATEVNWDEEKECFESLSKECAMFYSIRKQYISEESTLSG 699
GL I I L E+ DE E+L K+ +Y + K + E++ G
Sbjct: 209 GLQIHITELNFEIKGDESNRTPENLKKQADRYYEMMKLLLKEDTDNGG 256
>sp|P02239|LGB1_LUPLU LEGHEMOGLOBIN I.
Length = 153
Score = 62 (31.2 bits), Expect = 3.9, P = 0.98
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 280 YAAYLPKNTHPFLYLSLEISPQNVDV 305
+ A +PKNTH F L LEI+P D+
Sbjct: 18 FNANIPKNTHRFFTLVLEIAPGAKDL 43
>sp|P71690|YR39_MYCTU HYPOTHETICAL 32.9 KD PROTEIN CY21B4.39.
Length = 301
Score = 64 (32.1 bits), Expect = 5.1, P = 0.99
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 184 SVHNAGISFSVKKQGETVADVRTLPNASTVDNIRSIFG 221
+V + G + + + V DVR LPN VD +R + G
Sbjct: 181 TVESFGFKYGLPMDADMVMDVRFLPNPHWVDELRPLTG 218
>sp|P08640|AMYH_YEAST GLUCOAMYLASE S1/S2 PRECURSOR (EC 3.2.1.3) (GLUCAN
1,4-ALPHA- GLUCOSIDASE) (1,4-ALPHA-D-GLUCAN GLUCOHYDROLASE).
Length = 1367
Score = 69 (34.4 bits), Expect = 5.5, P = 1.0
Identities = 18/70 (25%), Positives = 27/70 (38%)
Query: 399 PLSKPLSSQPQAIVTEDKTDISSGRARQQDEEMLELPAPAEVAAKNQSLEGDTTKGTSEM 458
P++ + A VT T+ SS E P P ++ +S T T+E
Sbjct: 421 PVTSSTTESSSAPVTSSTTESSSAPVTSSTTESSSAPVPTPSSSTTESSSAPVTSSTTES 480
Query: 459 SEKRGPTSSN 468
S PT S+
Sbjct: 481 SSAPVPTPSS 490
>sp|P40758|YCBA_BACSU HYPOTHETICAL SENSOR-LIKE HISTIDINE KINASE (EC 2.7.3.-)
(ORFH) (FRAGMENT).
Length = 78
Score = 57 (28.9 bits), Expect = 5.7, P = 1.0
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 60 QIQDNGTGIRKEDLDIVCERFTTSKLQSF 88
Q++DNG GI ++ DIV + TSK F
Sbjct: 3 QVEDNGPGISEKIGDIVFDPGFTSKYDEF 31
>sp|P15522|WHEP_CAMDR WHEY PROTEIN.
Length = 112
Score = 58 (29.4 bits), Expect = 8.7, P = 1.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 411 IVTEDKTDISSGRARQQDEEMLELPAPAEVAAKNQSLEGDTTK 453
+V++D I S R Q L P P E + +N + + + TK
Sbjct: 20 LVSKDDVVIKSARRHQNQNPKLLHPVPQESSFRNTATQSEETK 62
Parameters:
cpus=1
filter=seg
compat1.4
ctxfactor=1.00
E=10
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.133 0.378 same same same
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 756 756 10. 64 3 11 22 0.21 34
Statistics:
Database: /am/db/blast/sp35
Title: SWISS-PROT Release 35.0
Released: November 30, 1997
Posted: 2:27:45 PM CST Dec 15, 1997
Format: BLAST-1.4
# of letters in database: 25,083,768
# of sequences in database: 69,113
# of database sequences satisfying E: 23
No. of states in DFA: 572 (56 KB)
Total size of DFA: 211 KB (256 KB)
Time to generate neighborhood: 0.03u 0.02s 0.05t Elapsed: 00:00:00
No. of threads or processors used: 1
Search cpu time: 31.10u 0.18s 31.28t Elapsed: 00:00:31
Total cpu time: 31.15u 0.22s 31.37t Elapsed: 00:00:32
Start: Tue Sep 19 11:50:59 2000 End: Tue Sep 19 11:51:31 2000
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