BLASTP 2.0MP-WashU [04-Sep-2000]
Copyright (C) 1996-2000 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2000) http://blast.wustl.edu
Query= gi|730028|sp|P40692|MLH1_HUMAN MUTL PROTEIN HOMOLOG 1 (DNA MISMATCH
REPAIR PROTEIN MLH1)
(756 letters)
Database: SWISS-PROT Release 35.0
69,113 sequences; 25,083,768 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
sp|P40692|MLH1_HUMAN MUTL PROTEIN HOMOLOG 1 (DNA MISMATCH... 3735 0.0 1
sp|P38920|MLH1_YEAST MUTL PROTEIN HOMOLOG 1 (DNA MISMATCH... 1254 1.8e-128 1
sp|P44494|MUTL_HAEIN DNA MISMATCH REPAIR PROTEIN MUTL. 538 1.3e-52 1
sp|P23367|MUTL_ECOLI DNA MISMATCH REPAIR PROTEIN MUTL. 537 1.7e-52 1
sp|P14161|MUTL_SALTY DNA MISMATCH REPAIR PROTEIN MUTL. 516 2.9e-50 1
sp|P49850|MUTL_BACSU DNA MISMATCH REPAIR PROTEIN MUTL. 486 2.8e-49 2
sp|P14160|HEXB_STRPN DNA MISMATCH REPAIR PROTEIN HEXB. 485 1.2e-46 1
sp|P54278|PMS2_HUMAN PMS1 PROTEIN HOMOLOG 2 (DNA MISMATCH... 434 3.6e-38 3
sp|P54280|PMS1_SCHPO DNA MISMATCH REPAIR PROTEIN PMS1. 424 1.7e-37 1
sp|P54279|PMS2_MOUSE PMS1 PROTEIN HOMOLOG 2 (DNA MISMATCH... 385 1.5e-32 2
sp|P14242|PMS1_YEAST DNA MISMATCH REPAIR PROTEIN PMS1. 378 3.1e-32 1
sp|P54277|PMS1_HUMAN PMS1 PROTEIN HOMOLOG 1 (DNA MISMATCH... 335 6.5e-28 2
sp|Q07737|CHVG_AGRTU SENSOR PROTEIN CHVG (EC 2.7.3.-). 84 0.84 1
sp|P40758|YCBA_BACSU HYPOTHETICAL SENSOR-LIKE HISTIDINE K... 57 0.91 1
sp|P35164|RESE_BACSU SENSOR PROTEIN RESE (EC 2.7.3.-). 81 0.96 1
sp|P24201|MPRA_ECOLI TRANSCRIPTIONAL REPRESSOR MPRA (EMRR... 57 0.97 2
sp|P23870|HHA_ECOLI HAEMOLYSIN EXPRESSION MODULATING PROT... 54 0.994 1
sp|P54070|KTR6_YEAST PROBABLE MANNOSYLTRANSFERASE KTR6 (E... 77 0.998 1
>sp|P40692|MLH1_HUMAN MUTL PROTEIN HOMOLOG 1 (DNA MISMATCH REPAIR PROTEIN
MLH1).
Length = 756
Score = 3735 (1319.8 bits), Expect = 0.0, P = 0.0
Identities = 730/756 (96%), Positives = 730/756 (96%)
Query: 1 MSFVAGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQ 60
MSFVAGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQ
Sbjct: 1 MSFVAGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQ 60
Query: 61 IQDNGTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTA 120
IQDNGTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTA
Sbjct: 61 IQDNGTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTA 120
Query: 121 DGKCAYRASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVV 180
DGKCAYRASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVV
Sbjct: 121 DGKCAYRASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVV 180
Query: 181 GRYSVHNAGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGCEDKTLAF 240
GRYSVHNAGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGCEDKTLAF
Sbjct: 181 GRYSVHNAGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGCEDKTLAF 240
Query: 241 KMNGYISNANYSVKKCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISP 300
KMNGYISNANYSVKKCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISP
Sbjct: 241 KMNGYISNANYSVKKCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISP 300
Query: 301 QNVDVNVHPTKHEVHFLHEESILERVQQHIESKLLGSNSSRMYFTQTLLPGLAGPSGEMV 360
QNVDVNVHPTKHEVHFLHEESILERVQQHIESKLLGSNSSRMYFTQTLLPGLAGPSGEMV
Sbjct: 301 QNVDVNVHPTKHEVHFLHEESILERVQQHIESKLLGSNSSRMYFTQTLLPGLAGPSGEMV 360
Query: 361 KXXXXXXXXXXXXXXDKVYAHQMVRTDSREQKLDAFLQPLSKPLSSQPQAIVTEDKTDIS 420
K DKVYAHQMVRTDSREQKLDAFLQPLSKPLSSQPQAIVTEDKTDIS
Sbjct: 361 KSTTSLTSSSTSGSSDKVYAHQMVRTDSREQKLDAFLQPLSKPLSSQPQAIVTEDKTDIS 420
Query: 421 SGRARQQDEEMLELPAPAEVAAKNQSLEGDTTKGTSEMSEKRGPTSSNPRKRHRXXXXXX 480
SGRARQQDEEMLELPAPAEVAAKNQSLEGDTTKGTSEMSEKRGPTSSNPRKRHR
Sbjct: 421 SGRARQQDEEMLELPAPAEVAAKNQSLEGDTTKGTSEMSEKRGPTSSNPRKRHREDSDVE 480
Query: 481 XXXXXXRKEMTAACTPRRRIINLTSVLSLQEEINEQGHEVLREMLHNHSFVGCVNPQWAL 540
RKEMTAACTPRRRIINLTSVLSLQEEINEQGHEVLREMLHNHSFVGCVNPQWAL
Sbjct: 481 MVEDDSRKEMTAACTPRRRIINLTSVLSLQEEINEQGHEVLREMLHNHSFVGCVNPQWAL 540
Query: 541 AQHQTKLYLLNTTKLSEELFYQILIYDFANFGVLRLSEPAPLFDLAMLALDSPESGWTEE 600
AQHQTKLYLLNTTKLSEELFYQILIYDFANFGVLRLSEPAPLFDLAMLALDSPESGWTEE
Sbjct: 541 AQHQTKLYLLNTTKLSEELFYQILIYDFANFGVLRLSEPAPLFDLAMLALDSPESGWTEE 600
Query: 601 DGPKEGLAEYIVEFLKKKAEMLADYFSLEIDEEGNLIGLPLLIDNYVPPLEGLPIFILRL 660
DGPKEGLAEYIVEFLKKKAEMLADYFSLEIDEEGNLIGLPLLIDNYVPPLEGLPIFILRL
Sbjct: 601 DGPKEGLAEYIVEFLKKKAEMLADYFSLEIDEEGNLIGLPLLIDNYVPPLEGLPIFILRL 660
Query: 661 ATEVNWDEEKECFESLSKECAMFYSIRKQYISEESTLSGQQSEVPGSIPNSWKWTVEHIV 720
ATEVNWDEEKECFESLSKECAMFYSIRKQYISEESTLSGQQSEVPGSIPNSWKWTVEHIV
Sbjct: 661 ATEVNWDEEKECFESLSKECAMFYSIRKQYISEESTLSGQQSEVPGSIPNSWKWTVEHIV 720
Query: 721 YKALRSHILPPKHFTEDGNILQLANLPDLYKVFERC 756
YKALRSHILPPKHFTEDGNILQLANLPDLYKVFERC
Sbjct: 721 YKALRSHILPPKHFTEDGNILQLANLPDLYKVFERC 756
>sp|P38920|MLH1_YEAST MUTL PROTEIN HOMOLOG 1 (DNA MISMATCH REPAIR PROTEIN
MLH1).
Length = 769
Score = 1254 (446.5 bits), Expect = 1.8e-128, P = 1.8e-128
Identities = 290/782 (37%), Positives = 444/782 (56%)
Query: 8 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTG 67
I+ LD +VVN+IAAGE+I P NA+KEM+EN +DA +T I ++VKEGG+K++QI DNG+G
Sbjct: 5 IKALDASVVNKIAAGEIIISPVNALKEMMENSIDANATMIDILVKEGGIKVLQITDNGSG 64
Query: 68 IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 127
I K DL I+CERFTTSKLQ FEDL+ I TYGFRGEALASISHVA VT+TTK + +CA+R
Sbjct: 65 INKADLPILCERFTTSKLQKFEDLSQIQTYGFRGEALASISHVARVTVTTKVKEDRCAWR 124
Query: 128 ASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVHN 187
SY++GK+ PKP AG GT I VEDLF+NI +R +AL++ ++EY KIL+VVGRY++H+
Sbjct: 125 VSYAEGKMLESPKPVAGKDGTTILVEDLFFNIPSRLRALRSHNDEYSKILDVVGRYAIHS 184
Query: 188 AGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGC---EDKTLAFKMNG 244
I FS KK G++ + P+ + D IR++F +V+ LI ED L ++G
Sbjct: 185 KDIGFSCKKFGDSNYSLSVKPSYTVQDRIRTVFNKSVASNLITFHISKVEDLNLE-SVDG 243
Query: 245 YISNANYSVKKCIF-LLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNV 303
+ N N+ KK I + FIN+RLV LR+A+ +VY+ YLPK PF+YL + I P V
Sbjct: 244 KVCNLNFISKKSISPIFFINNRLVTCDLLRRALNSVYSNYLPKGNRPFIYLGIVIDPAAV 303
Query: 304 DVNVHPTKHEVHFLHEESILERVQQHIESKLLGSNSSRMYFTQTLL---PGLAGPSGEMV 360
DVNVHPTK EV FL ++ I+E++ + ++L ++SR + ++ P P + +
Sbjct: 304 DVNVHPTKREVRFLSQDEIIEKIANQLHAELSAIDTSRTFKASSISTNKPESLIPFNDTI 363
Query: 361 KXXXXXXXXXXXXXXDKVY--AHQMVRTDSREQ----KLDAFLQPLSKPLSSQPQAIVTE 414
+ + Y A+ +R R++ ++DA ++ LSS Q
Sbjct: 364 ESDRNRKSLRQAQVVENSYTTANSQLRKAKRQENKLVRIDASQAKITSFLSSSQQFNFEG 423
Query: 415 DKTDISSGRARQQDEEMLELPAPAEVAAKNQSLEGDTTKGTSEMSEKRGPTSSNPRKRHR 474
T RQ E + + ++ A K E + + + +++ P+K+ +
Sbjct: 424 SSTK------RQLSEPKVTNVSHSQEAEKLTLNESEQPRDANTINDN--DLKDQPKKKQK 475
Query: 475 XXXXXXXXXXXXRKEMTAAC------TPRRRI-INLTSVLSLQEEINEQGHEVLREMLHN 527
K P+ R+ +NLTS+ L+E++++ H L ++ N
Sbjct: 476 LGDYKVPSIADDEKNALPISKDGYIRVPKERVNVNLTSIKKLREKVDDSIHRELTDIFAN 535
Query: 528 HSFVGCVNPQWALA--QHQTKLYLLNTTKLSEELFYQILIYDFANFGVLRLSEPAPLFDL 585
++VG V+ + LA QH KL+L++ + ELFYQI + DFANFG + L D+
Sbjct: 536 LNYVGVVDEERRLAAIQHDLKLFLIDYGSVCYELFYQIGLTDFANFGKINLQSTNVSDDI 595
Query: 586 AMLALDSPESGWTEEDGPKEGLAEYIVEFLKKKAEMLADYFSLEIDEEG--------NLI 637
+ L S E +D KE + I + + ML +Y+S+E+ +G L
Sbjct: 596 VLYNLLS-EFDELNDDASKEKIISKIWDM----SSMLNEYYSIELVNDGLDNDLKSVKLK 650
Query: 638 GLPLLIDNYVPPLEGLPIFILRLATEVNWDEEKECFESLSKECAMFY---SIRKQYISEE 694
LPLL+ Y+P L LP FI RL EV+W++E+EC + + +E A+ Y + K S+
Sbjct: 651 SLPLLLKGYIPSLVKLPFFIYRLGKEVDWEDEQECLDGILREIALLYIPDMVPKVDTSDA 710
Query: 695 STLSGQQSEVPGSIPNSWKWTVEHIVYKALRSHILPPKHFTEDGNILQLANLPDLYKVFE 754
S ++++ + +EH+++ ++ L P+H +D ++++ANLPDLYKVFE
Sbjct: 711 SLSEDEKAQFINRKEHISS-LLEHVLFPCIKRRFLAPRHILKD--VVEIANLPDLYKVFE 767
Query: 755 RC 756
RC
Sbjct: 768 RC 769
>sp|P44494|MUTL_HAEIN DNA MISMATCH REPAIR PROTEIN MUTL.
Length = 629
Score = 538 (194.4 bits), Expect = 1.3e-52, P = 1.3e-52
Identities = 114/319 (35%), Positives = 191/319 (59%)
Query: 8 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTG 67
I+ L + N+IAAGEV++RPA+ +KE++EN LDA + IQ+ ++ GG LI+I+DNG G
Sbjct: 3 IKILSPQLANQIAAGEVVERPASVVKELVENSLDAGANKIQIDIENGGANLIRIRDNGCG 62
Query: 68 IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 127
I KE+L + R TSK+ +DL +I + GFRGEALASIS V+ +T+T++T + A++
Sbjct: 63 IPKEELSLALARHATSKIADLDDLEAILSLGFRGEALASISSVSRLTLTSRTEEQTEAWQ 122
Query: 128 ASYSDGK-LKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVH 186
Y+ G+ ++ KP + GT + V +LF+N RRK L+ E+ I EV+ R ++
Sbjct: 123 V-YAQGRDMETTIKPASHPVGTTVEVANLFFNTPARRKFLRTDKTEFSHIDEVIRRIALT 181
Query: 187 NAGISFSVKKQGETVADVRTLPNAST-VDNIRSIFGNAVSRELIEIGCEDKTLAFKMNGY 245
+F++ G+ + R + + + +I G+ + + I + L ++G+
Sbjct: 182 KFNTAFTLTHNGKIIRQYRPAEAINQQLKRVAAICGDDFVKNALRIEWKHDDL--HLSGW 239
Query: 246 ISNANYS-VKKCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVD 304
++ N+S + + +IN R+V + AI YA YLP + +P L ++++P +VD
Sbjct: 240 VATPNFSRTQNDLSYCYINGRMVRDKVISHAIRQAYAQYLPTDAYPAFVLFIDLNPHDVD 299
Query: 305 VNVHPTKHEVHFLHEESIL 323
VNVHPTKHEV F H++ ++
Sbjct: 300 VNVHPTKHEVRF-HQQRLI 317
>sp|P23367|MUTL_ECOLI DNA MISMATCH REPAIR PROTEIN MUTL.
Length = 615
Score = 537 (194.1 bits), Expect = 1.7e-52, P = 1.7e-52
Identities = 122/339 (35%), Positives = 197/339 (58%)
Query: 8 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTG 67
I+ L + N+IAAGEV++RPA+ +KE++EN LDA +T I + ++ GG KLI+I+DNG G
Sbjct: 3 IQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCG 62
Query: 68 IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 127
I+K++L + R TSK+ S +DL +I + GFRGEALASIS V+ +T+T++TA+ + A++
Sbjct: 63 IKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEAWQ 122
Query: 128 ASYSDGK-LKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVH 186
A Y++G+ + KP A GT + V DLFYN RRK L+ E+ I E++ R ++
Sbjct: 123 A-YAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIALA 181
Query: 187 NAGISFSVKKQGETVADVRTLPNASTVDN-IRSIFGNAVSRELIEIGCEDKTLAFKMNGY 245
++ ++ G+ V R +P + + +I G A + + I + L + G+
Sbjct: 182 RFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLR--GW 239
Query: 246 ISNANYSVKKC--IFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNV 303
+++ N++ I ++N R++ + AI L + P L LEI P V
Sbjct: 240 VADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQV 299
Query: 304 DVNVHPTKHEVHF-----LHE---ESILERVQQHIESKL 334
DVNVHP KHEV F +H+ + +L +QQ +E+ L
Sbjct: 300 DVNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPL 338
>sp|P14161|MUTL_SALTY DNA MISMATCH REPAIR PROTEIN MUTL.
Length = 618
Score = 516 (186.7 bits), Expect = 2.9e-50, P = 2.9e-50
Identities = 119/339 (35%), Positives = 193/339 (56%)
Query: 8 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTG 67
I+ L + N+IAAGEV++RPA+ +KE++EN LDA +T + + ++ GG KLI+I+DNG G
Sbjct: 3 IQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRVDIDIERGGAKLIRIRDNGCG 62
Query: 68 IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 127
I+KE+L + R TSK+ S +DL +I + GFRGEALASIS V+ +T+T++TA+ A++
Sbjct: 63 IKKEELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQAEAWQ 122
Query: 128 ASYSDGK-LKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVH 186
A Y++G+ + KP A GT + V DLFYN RRK ++ E+ I E++ R ++
Sbjct: 123 A-YAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFNHIDEIIRRIALA 181
Query: 187 NAGISFSVKKQGETVADVRTLPNASTVDN-IRSIFGNAVSRELIEIGCEDKTLAFKMNGY 245
++ ++ G+ V R + + + +I G + + I + L + G+
Sbjct: 182 RFDVTLNLSHNGKLVRQYRAVAKDGQKERRLGAICGTPFLEQALAIEWQHGDLTLR--GW 239
Query: 246 ISNANYSVKKC--IFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNV 303
+++ N++ I ++N R++ + AI L + P L LEI P V
Sbjct: 240 VADPNHTTTALTEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQV 299
Query: 304 DVNVHPTKHEVHF-----LHE---ESILERVQQHIESKL 334
DVNVHP KHEV F +H+ + +L +QQ E+ L
Sbjct: 300 DVNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQTETAL 338
>sp|P49850|MUTL_BACSU DNA MISMATCH REPAIR PROTEIN MUTL.
Length = 627
Score = 486 (176.1 bits), Expect = 2.8e-49, Sum P(2) = 2.8e-49
Identities = 110/329 (33%), Positives = 186/329 (56%)
Query: 4 VAGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQD 63
+A VI+ DE + N+IAAGEV++RPA+ +KE++EN +DA ST I++ ++E GL I++ D
Sbjct: 1 MAKVIQLSDE-LSNKIAAGEVVERPASVVKELVENAIDADSTVIEIDIEEAGLASIRVLD 59
Query: 64 NGTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGK 123
NG G+ ED R TSK++ DL + T GFRGEAL SI+ V+H+ ITT T +G
Sbjct: 60 NGEGMENEDCKRAFRRHATSKIKDENDLFRVRTLGFRGEALPSIASVSHLEITTSTGEG- 118
Query: 124 CAYRASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRY 183
+ G + + + + +GT+I V +LF+N R K +K E G I +VV R
Sbjct: 119 AGTKLVLQGGNIISESRS-SSRKGTEIVVSNLFFNTPARLKYMKTVHTELGNITDVVNRI 177
Query: 184 SVHNAGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGCEDKTLAFKMN 243
++ + +S ++ G+ + ++T N + +I+G AV+++++ + +L F++
Sbjct: 178 ALAHPEVSIRLRHHGKNL--LQTNGNGDVRHVLAAIYGTAVAKKMLPLHVS--SLDFEVK 233
Query: 244 GYISNANYS-VKKCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQN 302
GYI+ + + +N R +++ L KA+ Y LP HP ++ + + P
Sbjct: 234 GYIALPEITRASRNYMSSVVNGRYIKNFPLVKAVHEGYHTLLPIGRHPITFIEITMDPIL 293
Query: 303 VDVNVHPTKHEVHFLHEESILERVQQHIE 331
VDVNVHP+K EV E + + ++ I+
Sbjct: 294 VDVNVHPSKLEVRLSKETELHDLIRDGIK 322
Score = 44 (20.5 bits), Expect = 2.8e-49, Sum P(2) = 2.8e-49
Identities = 8/32 (25%), Positives = 19/32 (59%)
Query: 531 VGCVNPQWALAQHQTKLYLLNTTKLSEELFYQ 562
+G ++ + LAQ++ LY+++ E + Y+
Sbjct: 442 IGQMHGTYILAQNENGLYIIDQHAAQERIKYE 473
>sp|P14160|HEXB_STRPN DNA MISMATCH REPAIR PROTEIN HEXB.
Length = 649
Score = 485 (175.8 bits), Expect = 1.2e-46, P = 1.2e-46
Identities = 116/328 (35%), Positives = 180/328 (54%)
Query: 8 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTG 67
I L E + N+IAAGEVI+RPA+ KE++EN +DA S+ I + ++E GLK +QI DNG G
Sbjct: 4 IIELPEMLANQIAAGEVIERPASVCKELVENAIDAGSSQIIIEIEEAGLKKVQITDNGHG 63
Query: 68 IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 127
I +++++ R TSK+++ DL I T GFRGEAL SI+ V+ +T+ T DG
Sbjct: 64 IAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLT-AVDGASHGT 122
Query: 128 ASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVHN 187
+ G P GT++ VEDLF+N R K +K+ E I+++V R + +
Sbjct: 123 KLVARGGEVEEVIPATSPVGTKVCVEDLFFNTPARLKYMKSQQAELSHIIDIVNRLGLAH 182
Query: 188 AGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGCEDKTLAFKMNGYIS 247
ISFS+ G+ + RT I I+G ++++IEI E+ L F+++G++S
Sbjct: 183 PEISFSLISDGKEMT--RTAGTGQLRQAIAGIYGLVSAKKMIEI--ENSDLDFEISGFVS 238
Query: 248 NANYS-VKKCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDVN 306
+ + LFIN R +++ L +AI + + L P + + I P DVN
Sbjct: 239 LPELTRANRNYISLFINGRYIKNFLLNRAILDGFGSKLMVGRFPLAVIHIHIDPYLADVN 298
Query: 307 VHPTKHEVHFLHEESILERVQQHIESKL 334
VHPTK EV E+ ++ V + I + L
Sbjct: 299 VHPTKQEVRISKEKELMTLVSEAIANSL 326
>sp|P54278|PMS2_HUMAN PMS1 PROTEIN HOMOLOG 2 (DNA MISMATCH REPAIR PROTEIN
PMS2).
Length = 862
Score = 434 (157.8 bits), Expect = 3.6e-38, Sum P(3) = 3.6e-38
Identities = 119/384 (30%), Positives = 205/384 (53%)
Query: 5 AGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDN 64
A I+ +D V++I +G+V+ + A+KE++EN LDA +T+I + +K+ G+ LI++ DN
Sbjct: 12 AKAIKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDN 71
Query: 65 GTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKC 124
G G+ +E+ + + + TSK+Q F DL + T+GFRGEAL+S+ ++ VTI+T A K
Sbjct: 72 GCGVEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHASAKV 131
Query: 125 AYRASYS-DGKL--KAP-PKPCAGNQGTQITVEDLFYNIATRRKAL-KNPSEEYGKILEV 179
R + +GK+ K P P+P +GT ++V+ LF + R K +N +EY K+++V
Sbjct: 132 GTRLMFDHNGKIIQKTPYPRP----RGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQV 187
Query: 180 VGRYSVHNAGISFSVKKQ---GETVADVRTLPNASTVDNIRSIFGNAVSRELI------- 229
+ Y + +AGI S Q G+ V T + S +NI S+FG + LI
Sbjct: 188 LHAYCIISAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQLQSLIPFVQLPP 247
Query: 230 -EIGCEDKTLA--------FKMNGYISNANYSVKKCIF---LLFINHRLVESTSLRKAIE 277
+ CE+ L+ F ++G+IS + V + FIN R + + + +
Sbjct: 248 SDSVCEEYGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFFINRRPCDPAKVCRLVN 307
Query: 278 TVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEESILERVQQHIESKLLGS 337
VY Y ++ +PF+ L++ + + VD+NV P K ++ L EE +L V +++ L+G
Sbjct: 308 EVYHMY-NRHQYPFVVLNISVDSECVDINVTPDKRQI-LLQEEKLLLAV---LKTSLIGM 362
Query: 338 NSSRMYFTQTLLPGLAGPSGEMVK 361
S + L G ++K
Sbjct: 363 FDSDVNKLNVSQQPLLDVEGNLIK 386
Score = 41 (19.5 bits), Expect = 3.6e-38, Sum P(3) = 3.6e-38
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 550 LNTTKLSEELFYQIL-IYDFANFGVLRLSEPAPLFDLAMLALDSPES-GWTEEDGPKE 605
LN T ++E + + L I+ F + + E AP+ + A L + P S WT GP++
Sbjct: 729 LNLTAVNEAVLIENLEIFRKNGFDFV-IDENAPVTERAKL-ISLPTSKNWTF--GPQD 782
Score = 40 (19.1 bits), Expect = 3.6e-38, Sum P(3) = 3.6e-38
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 398 QPLSKPLSSQPQAIVTEDKTDISSGRARQ 426
+P+ + P E+K D+S R R+
Sbjct: 394 KPMVEKQDQSPSLRTGEEKKDVSISRLRE 422
>sp|P54280|PMS1_SCHPO DNA MISMATCH REPAIR PROTEIN PMS1.
Length = 794
Score = 424 (154.3 bits), Expect = 1.7e-37, P = 1.7e-37
Identities = 137/520 (26%), Positives = 242/520 (46%)
Query: 8 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTG 67
++ +D V++I +G+VI A+A+KE++EN LD+ +T+I++ K G+ I++ DNG+G
Sbjct: 4 VKPIDANTVHKICSGQVITDVASAVKELVENSLDSGATTIEIRFKNYGINSIEVVDNGSG 63
Query: 68 IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADG--KCA 125
I D + + ++ TSK+ FEDL ++ T+GFRGEAL+S+ V V I+T T + K
Sbjct: 64 IDAGDYESIGKKHFTSKITDFEDLEALQTFGFRGEALSSLCAVGQVIISTATQNEAPKGV 123
Query: 126 YRASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKAL-KNPSEEYGKILEVVGRYS 184
+G LK +GT + V DLF + RRK L KN E+ K + ++ Y+
Sbjct: 124 QLNLDHEGSLK-DKLTIPFQRGTSVMVNDLFCTLPVRRKLLEKNYKREFSKAISLLQAYA 182
Query: 185 VHNAGISFSVKKQGETVADVRTLPNASTVD---NIRSIFGNAVSRELIEIGCEDKTLAFK 241
+ F V Q + + L S D NI ++FG VS LI D +
Sbjct: 183 TISTNKRFMVYHQTKNSGKLLQLSTNSNKDMKLNIMNVFGTKVSSSLIP--WNDGII--- 237
Query: 242 MNGYISNANYSVKKCIF---LLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEI 298
GYIS + + +LFIN RLV + + I+ V+ Y + PF ++L I
Sbjct: 238 -EGYISRPHVGSTRASNERQMLFINRRLVNLPKIARVIQEVFKPYSMAQS-PFFAINLRI 295
Query: 299 SPQNVDVNVHPTKHEVHFLHEESILERVQQHIES--KLLG-----SNSSRMYFTQTLLPG 351
+ +D+NV P K V E+SI+E ++ +++ + G S S ++ + +P
Sbjct: 296 TNGTIDINVSPDKKSVFLSEEDSIIEFIKNSLQNLCESCGHAISCSRSQSIFSYSSQIPD 355
Query: 352 LAGPSGEMVKXXXXXXXXXXXXXXDKVYAHQMVRTDSREQKLDAFLQPLSKPLSSQPQAI 411
+G S + + D ++++ R+ + + ++A QP ++ ++
Sbjct: 356 SSGDSTDQ-ELPQSIPATESETSDDSSFSYK--RSPCKRKLVEATAQPAISTSVAEGASL 412
Query: 412 VTEDKTDISSGRARQQDEEMLELPAPAEVAAKNQSLEGDTT--KGTSEMSEKRGPTSSNP 469
K Q+D P +V A ++ ++ +++ S ++ SS P
Sbjct: 413 AQVSKP---LPERLQKDSMRRSSPLNEKVTASSERMKKKLALFASSTDTSMQKTIDSSFP 469
Query: 470 RKRHRXXXXXXXXXXXXRKEMTAACTPRRRIINLTSVLSL 509
K+ + + A TP + INL + S+
Sbjct: 470 LKQP-INKPSSNPNNLLLNDPSPASTPVAKTINLNEIESV 508
>sp|P54279|PMS2_MOUSE PMS1 PROTEIN HOMOLOG 2 (DNA MISMATCH REPAIR PROTEIN
PMS2).
Length = 859
Score = 385 (140.6 bits), Expect = 1.5e-32, Sum P(2) = 1.5e-32
Identities = 119/388 (30%), Positives = 209/388 (53%)
Query: 5 AGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDN 64
A I+ +D V++I +G+VI + A+KE+IEN +DA +T+I + +K+ G+ LI++ DN
Sbjct: 12 AKAIKPIDGKSVHQICSGQVILSLSTAVKELIENSVDAGATTIDLRLKDYGVDLIEVSDN 71
Query: 65 GTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKC 124
G G+ +E+ + + + TSK+Q F DL + T+GFRGEAL+S+ ++ VTI+T
Sbjct: 72 GCGVEEENFEGLALKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHGSASV 131
Query: 125 AYRASYS-DGKL--KAP-PKPCAGNQGTQITVEDLFYNIATRRKAL-KNPSEEYGKILEV 179
R + +GK+ K P P+P +GT ++V+ LFY + R K +N +EY K+++V
Sbjct: 132 GTRLVFDHNGKITQKTPYPRP----KGTTVSVQHLFYTLPVRYKEFQRNIKKEYSKMVQV 187
Query: 180 VGRYSVHNAGISFSVKKQ---GETVADVRTLPNASTVDNIRSIFGNAVSRELI------- 229
+ Y + +AG+ S Q G+ A V T + +NI S+FG + LI
Sbjct: 188 LQAYCIISAGVRVSCTNQLGQGKRHAVVCTSGTSGMKENIGSVFGQKQLQSLIPFVQLPP 247
Query: 230 -EIGCED---------KTLA-FKMNGYISN-ANYSVKKC-IFLLFINHRLVESTSLRKAI 276
+ CE+ KT + F+ + + + A V++ F I + + SL ++
Sbjct: 248 SDAVCEEYGLSTSGRHKTFSTFRASFHSARTAPGGVQQTGSFSSSIRGPVTQQRSLSLSM 307
Query: 277 ETVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEESILERVQQHIESKLLG 336
Y Y ++ +PF+ L++ + + VD+NV P K ++ L EE +L V +++ L+G
Sbjct: 308 R-FYHMY-NRHQYPFVVLNVSVDSECVDINVTPDKRQI-LLQEEKLLLAV---LKTSLIG 361
Query: 337 ---SNSSRMYFTQTLLPGLAGPSGEMVK 361
S+++++ Q P L G +VK
Sbjct: 362 MFDSDANKLNVNQQ--P-LLDVEGNLVK 386
Score = 42 (19.8 bits), Expect = 1.5e-32, Sum P(2) = 1.5e-32
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 550 LNTTKLSEELFYQIL-IYDFANFGVLRLSEPAPLFDLAMLALDSPES-GWTEEDGPKE 605
LN T ++E + + L I+ F + + E AP+ + A L + P S WT GP++
Sbjct: 726 LNLTAVNEAVLIENLEIFRKNGFDFV-IDEDAPVTERAKL-ISLPTSKNWTF--GPQD 779
Score = 39 (18.8 bits), Expect = 2.5e-32, Sum P(3) = 2.5e-32
Identities = 20/73 (27%), Positives = 31/73 (42%)
Query: 398 QPLSKPLSSQPQAIVTEDKTDISS-GRARQQDEEMLELPAPAEVAAKNQSLEGDTTKGTS 456
+P+ + P T D+ ++S R R E L E+ ++ + T+ S
Sbjct: 394 KPVPGKQDNSPSLKSTADEKRVASISRLR----EAFSLHPTKEIKSRGPET-AELTR--S 446
Query: 457 EMSEKRGPTSSNP 469
SEKRG SS P
Sbjct: 447 FPSEKRGVLSSYP 459
>sp|P14242|PMS1_YEAST DNA MISMATCH REPAIR PROTEIN PMS1.
Length = 904
Score = 378 (138.1 bits), Expect = 3.1e-32, P = 3.1e-32
Identities = 106/343 (30%), Positives = 179/343 (52%)
Query: 8 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTG 67
I ++++ V+RI +G+VI A+KE+++N +DA + I++I K+ GL+ I+ DNG G
Sbjct: 35 IHQINDIDVHRITSGQVITDLTTAVKELVDNSIDANANQIEIIFKDYGLESIECSDNGDG 94
Query: 68 IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 127
I + + + + TSK+ F+D+A + T GFRGEAL+S+ +A +++ T T+ K A +
Sbjct: 95 IDPSNYEFLALKHYTSKIAKFQDVAKVQTLGFRGEALSSLCGIAKLSVITTTSPPK-ADK 153
Query: 128 ASYSD-GKLKAPPKPCAGNQGTQITVEDLFYNIATRRKAL-KNPSEEYGKILEVVGRYSV 185
Y G + + + N+GT + V LF+N+ R+K K ++ K L V+ Y++
Sbjct: 154 LEYDMVGHITSKTTT-SRNKGTTVLVSQLFHNLPVRQKEFSKTFKRQFTKCLTVIQGYAI 212
Query: 186 HNAGISFSV---KKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGC-------ED 235
NA I FSV +G+ + T+ N+S NI S+FG R L E+ ++
Sbjct: 213 INAAIKFSVWNITPKGKKNLILSTMRNSSMRKNISSVFGAGGMRGLEEVDLVLDLNPFKN 272
Query: 236 KTLA--------------FKMNGYISNANYSV---KKCIFLLFINHRLVESTSLRKAIET 278
+ L ++ GYIS ++ K +++N R VE ++L K
Sbjct: 273 RMLGKYTDDPDFLDLDYKIRVKGYISQNSFGCGRNSKDRQFIYVNKRPVEYSTLLKCCNE 332
Query: 279 VYAAYLPKNTH-PFLYLSLEISPQNVDVNVHPTKHEVHFLHEE 320
VY + N P ++L+LE+ +DVNV P K + LH E
Sbjct: 333 VYKTF--NNVQFPAVFLNLELPMSLIDVNVTPDKRVI-LLHNE 372
>sp|P54277|PMS1_HUMAN PMS1 PROTEIN HOMOLOG 1 (DNA MISMATCH REPAIR PROTEIN
PMS1).
Length = 932
Score = 335 (123.0 bits), Expect = 6.5e-28, Sum P(2) = 6.5e-28
Identities = 92/329 (27%), Positives = 163/329 (49%)
Query: 8 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTG 67
+++L V +++ ++I + +KE+IEN LDA +TS+ V ++ G I+++DNG G
Sbjct: 1 MKQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEG 60
Query: 68 IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTA-DGKCAY 126
I+ D ++ ++ TSK+ S EDL +++TYGFRGEAL SI +A V ITT+TA D
Sbjct: 61 IKAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTRTAADNFSTQ 120
Query: 127 RASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRK---ALKNPSEEYGKILEVVGRY 183
G + + KP QGT +T LF N+ R++ K +E KI +++ +
Sbjct: 121 YVLDGSGHILSQ-KPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKIQDLLMSF 179
Query: 184 SVHNAGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGCEDKTLAFKMN 243
+ + + + + + S+ G AV + + ++
Sbjct: 180 GILKPDLRIVFVHNKAVIWQKSRVSDHKMA--LMSVLGTAVMNNMESFQYHSEESQIYLS 237
Query: 244 GYIS--NANYSVKKCIF----LLFINHRLVESTSLRKAIETVY-AAYLPKNT--HPFLYL 294
G++ +A++S +FIN R V + K I Y L ++T +P +L
Sbjct: 238 GFLPKCDADHSFTSLSTPERSFIFINSRPVHQKDILKLIRHHYNLKCLKESTRLYPVFFL 297
Query: 295 SLEISPQNVDVNVHPTKHEVHFLHEESIL 323
+++ +VDVN+ P K +V ++ES+L
Sbjct: 298 KIDVPTADVDVNLTPDKSQVLLQNKESVL 326
Score = 53 (23.7 bits), Expect = 6.5e-28, Sum P(2) = 6.5e-28
Identities = 18/77 (23%), Positives = 35/77 (45%)
Query: 642 LIDNYVPPLEGLPIFILRLATEVNWDEEKECFESLSKECAMFYSIRKQYISEESTLSGQQ 701
LI+N LE + I L ++ +E+ + E +K+ + S K+ I +ES +S +
Sbjct: 590 LIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQESQMSLKD 649
Query: 702 SEVPGSIPNSWKWTVEH 718
++W +H
Sbjct: 650 GRKKIKPTSAWNLAQKH 666
Score = 44 (20.5 bits), Expect = 5.6e-27, Sum P(2) = 5.6e-27
Identities = 29/133 (21%), Positives = 59/133 (44%)
Query: 445 QSLEGDTTKGTSEMSEKRGPTSS-NPRKRHRXXXXXXXXXXXXRKEMTAACTPRRRIINL 503
+++E ++ + +K PTS+ N ++H+ E+ + +RR N+
Sbjct: 637 RAIEQESQMSLKDGRKKIKPTSAWNLAQKHKLKTSLSNQPKLD--ELLQSQIEKRRSQNI 694
Query: 504 TSV---LSLQE-EIN--EQGHEVLRE-----MLHNHSFVGCVNPQWALAQHQTKLYLLNT 552
V S++ +IN +Q L E ++HN F W + +T++ LLN
Sbjct: 695 KMVQIPFSMKNLKINFKKQNKVDLEEKDEPCLIHNLRFPDA----WLMTS-KTEVMLLNP 749
Query: 553 TKLSEELFYQILI 565
++ E L ++ L+
Sbjct: 750 YRVEEALLFKRLL 762
Score = 37 (18.1 bits), Expect = 2.8e-27, Sum P(3) = 2.8e-27
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 302 NVDVNVHPTKHEVHFLHEES 321
NVD +V P ++++H ++ES
Sbjct: 382 NVDTSVIPFQNDMH--NDES 399
>sp|Q07737|CHVG_AGRTU SENSOR PROTEIN CHVG (EC 2.7.3.-).
Length = 690
Score = 84 (34.6 bits), Expect = 1.8, P = 0.84
Identities = 38/122 (31%), Positives = 55/122 (45%)
Query: 27 RPANAIKEMIENCLDAKST-SIQVIVKEGGLK---LIQIQDNGTGIRKEDLDIVCERFTT 82
R + +IEN S S ++ V+ K ++Q++DNG GI+ ED+D + ERF T
Sbjct: 463 RIGQIVTNLIENARSFVSEESGRITVRLSRHKDRCIVQVEDNGPGIQAEDIDRIFERFYT 522
Query: 83 SKLQSFEDLASISTYGF---RGEALASISHVAHVTITTKTADGKCAYRASYSDGKLKAPP 139
+ S E S G R A A T +T TA Y+A S + + P
Sbjct: 523 DRPAS-EGFGQNSGLGLSISRQIAEAHGGSSGRKTWSTNTA----LYQARASPCRCRRP- 576
Query: 140 KP 141
KP
Sbjct: 577 KP 578
>sp|P40758|YCBA_BACSU HYPOTHETICAL SENSOR-LIKE HISTIDINE KINASE (EC 2.7.3.-)
(ORFH) (FRAGMENT).
Length = 78
Score = 57 (25.1 bits), Expect = 2.5, P = 0.91
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 60 QIQDNGTGIRKEDLDIVCERFTTSKLQSF 88
Q++DNG GI ++ DIV + TSK F
Sbjct: 3 QVEDNGPGISEKIGDIVFDPGFTSKYDEF 31
>sp|P35164|RESE_BACSU SENSOR PROTEIN RESE (EC 2.7.3.-).
Length = 589
Score = 81 (33.6 bits), Expect = 3.2, P = 0.96
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 30 NAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTGIRKEDLDIVCERF 80
N I + + S SI V + GLK I I+D+G+GI +EDL + ERF
Sbjct: 488 NLIDNALRHTSAGGSVSISVHSVKDGLK-IDIKDSGSGIPEEDLPFIFERF 537
>sp|P24201|MPRA_ECOLI TRANSCRIPTIONAL REPRESSOR MPRA (EMRR PROTEIN).
Length = 176
Score = 57 (25.1 bits), Expect = 3.5, Sum P(2) = 0.97
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 310 TKHEVHFLHEESILERVQQHIESKLLGSNSSRMYFTQ 346
++HE F ++E +L R+ H++SKLL N ++M Q
Sbjct: 17 SRHE-DFPYQEILLTRLCMHMQSKLL-ENRNKMLKAQ 51
Score = 56 (24.8 bits), Expect = 3.5, Sum P(2) = 0.97
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 497 RRRIINLTSVLSLQEEINEQGHEVLREMLH-NHSFVGCVNPQWALAQHQTKLYLLNTTK 554
RR N L LQ + E+GHE LRE+L H+ C++ W+ K L T+
Sbjct: 103 RRESDNDRRCLHLQ--LTEKGHEFLREVLPPQHN---CLHQLWSALSTTEKDQLEQITR 156
>sp|P23870|HHA_ECOLI HAEMOLYSIN EXPRESSION MODULATING PROTEIN.
Length = 72
Score = 54 (24.1 bits), Expect = 5.2, P = 0.99
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 669 EKECFESLSKECAMFYSIRKQYISEESTLSGQQSEVPGSIPNSWKW 714
EK +E E A+FYS ++E T++ ++P S+ WK+
Sbjct: 29 EKNKYELSDNELAVFYSAADHRLAE-LTMNKLYDKIPSSV---WKF 70
>sp|P54070|KTR6_YEAST PROBABLE MANNOSYLTRANSFERASE KTR6 (EC 2.4.1.131).
Length = 446
Score = 77 (32.2 bits), Expect = 6.1, P = 1.0
Identities = 24/108 (22%), Positives = 51/108 (47%)
Query: 188 AGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGCEDKTLAFKMNGYIS 247
A IS +++ ++ + L + + IR+ NA+ ++ G + TL F + YI+
Sbjct: 52 AKISAEEQRRIQSEQEEAELKQSLEGEAIRNATVNAIKEKIKSYGGNETTLGFMVPSYIN 111
Query: 248 NANYSVKKCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLS 295
+ K C F+ I R T + ++I+ V + +P++++S
Sbjct: 112 HRGSPPKAC-FVSLITER-DSMTQILQSIDEVQVKFNKNFAYPWVFIS 157
Parameters:
cpus=1
filter=seg
postsw
ctxfactor=1.00
E=10
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.133 0.378 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 756 756 10. 76 3 11 22 0.21 34
37 0.22 37
Statistics:
Database: /am/db/blast/sp35
Title: SWISS-PROT Release 35.0
Released: November 30, 1997
Posted: 2:27:45 PM CST Dec 15, 1997
Format: BLAST-1.4
# of letters in database: 25,083,768
# of sequences in database: 69,113
# of database sequences satisfying E: 18
No. of states in DFA: 572 (56 KB)
Total size of DFA: 211 KB (256 KB)
Time to generate neighborhood: 0.01u 0.02s 0.03t Elapsed: 00:00:00
No. of threads or processors used: 1
Search cpu time: 33.76u 0.40s 34.16t Elapsed: 00:00:35
Total cpu time: 33.90u 0.45s 34.35t Elapsed: 00:00:35
Start: Wed Sep 20 15:06:31 2000 End: Wed Sep 20 15:07:06 2000
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