BLASTP 2.2.2 [Jan-08-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|730028|sp|P40692|MLH1_HUMAN MUTL PROTEIN HOMOLOG 1 (DNA
MISMATCH REPAIR PROTEIN MLH1)
(756 letters)
Database: sp35
69,113 sequences; 25,083,768 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|604369|sp|P40692|MLH1_HUMAN MUTL PROTEIN HOMOLOG 1 (DNA MISMA... 1293 0.0
gi|825572|sp|P38920|MLH1_YEAST MUTL PROTEIN HOMOLOG 1 (DNA MISMA... 437 e-122
gi|1573016|sp|P44494|MUTL_HAEIN DNA MISMATCH REPAIR PROTEIN MUTL. 190 4e-48
gi|304915|sp|P23367|MUTL_ECOLI DNA MISMATCH REPAIR PROTEIN MUTL. 190 5e-48
gi|154186|sp|P14161|MUTL_SALTY DNA MISMATCH REPAIR PROTEIN MUTL. 183 8e-46
gi|1002521|sp|P49850|MUTL_BACSU DNA MISMATCH REPAIR PROTEIN MUTL. 172 1e-42
gi|153657|sp|P14160|HEXB_STRPN DNA MISMATCH REPAIR PROTEIN HEXB. 172 1e-42
gi|557470|sp|P54278|PMS2_HUMAN PMS1 PROTEIN HOMOLOG 2 (DNA MISMA... 154 3e-37
sp|P54280|PMS1_SCHPO DNA MISMATCH REPAIR PROTEIN PMS1. 151 3e-36
gi|896063|sp|P54279|PMS2_MOUSE PMS1 PROTEIN HOMOLOG 2 (DNA MISMA... 137 3e-32
gi|887629|sp|P14242|PMS1_YEAST DNA MISMATCH REPAIR PROTEIN PMS1. 135 2e-31
gi|535513|sp|P54277|PMS1_HUMAN PMS1 PROTEIN HOMOLOG 1 (DNA MISMA... 120 5e-27
gi|304123|sp|Q07737|CHVG_AGRTU SENSOR PROTEIN CHVG (EC 2.7.3.-). 34 0.54
gi|410142|sp|P35164|RESE_BACSU SENSOR PROTEIN RESE (EC 2.7.3.-). 33 1.1
gi|22652|sp|P36183|ENPL_HORVU ENDOPLASMIN HOMOLOG PRECURSOR (GRP... 32 2.2
gi|1079689|sp|P54070|KTR6_YEAST PROBABLE MANNOSYLTRANSFERASE KTR... 32 2.9
gi|159354|sp|P27741|HS83_LEIAM HEAT SHOCK PROTEIN 83 (HSP 83). 32 2.9
sp|P56116|HTPG_HELPY HEAT SHOCK PROTEIN HTPG (HIGH TEMPERATURE P... 31 3.6
gi|48722|sp|P18636|MBHL_RHILV UPTAKE HYDROGENASE LARGE SUBUNIT (... 31 4.6
gi|1800079|sp|P06980|GSH1_ECOLI GLUTAMATE--CYSTEINE LIGASE (EC 6... 31 4.6
gi|48774|sp|P25280|YD3M_HERAU HYPOTHETICAL 68.4 KD PROTEIN IN HG... 31 5.8
gi|407324|sp|P51825|AF4_HUMAN AF-4 PROTEIN (FEL PROTEIN). 31 5.8
gi|6960|sp|P30630|LIN9_CAEEL LIN-9 PROTEIN. 30 7.4
gi|994798|sp|P46598|HS90_CANAL HEAT SHOCK PROTEIN 90 HOMOLOG. 30 9.4
>gi|604369|sp|P40692|MLH1_HUMAN MUTL PROTEIN HOMOLOG 1 (DNA MISMATCH
REPAIR PROTEIN MLH1).
Length = 756
Score = 1293 bits (3735), Expect = 0.0
Identities = 730/756 (96%), Positives = 730/756 (96%)
Query: 1 MSFVAGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQ 60
MSFVAGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQ
Sbjct: 1 MSFVAGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQ 60
Query: 61 IQDNGTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTA 120
IQDNGTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTA
Sbjct: 61 IQDNGTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTA 120
Query: 121 DGKCAYRASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVV 180
DGKCAYRASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVV
Sbjct: 121 DGKCAYRASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVV 180
Query: 181 GRYSVHNAGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGCEDKTLAF 240
GRYSVHNAGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGCEDKTLAF
Sbjct: 181 GRYSVHNAGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGCEDKTLAF 240
Query: 241 KMNGYISNANYSVKKCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISP 300
KMNGYISNANYSVKKCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISP
Sbjct: 241 KMNGYISNANYSVKKCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISP 300
Query: 301 QNVDVNVHPTKHEVHFLHEESILERVQQHIESKLLGSNSSRMYFTQTLLPGLAGPSGEMV 360
QNVDVNVHPTKHEVHFLHEESILERVQQHIESKLLGSNSSRMYFTQTLLPGLAGPSGEMV
Sbjct: 301 QNVDVNVHPTKHEVHFLHEESILERVQQHIESKLLGSNSSRMYFTQTLLPGLAGPSGEMV 360
Query: 361 KXXXXXXXXXXXXXXDKVYAHQMVRTDSREQKLDAFLQPLSKPLSSQPQAIVTEDKTDIS 420
K DKVYAHQMVRTDSREQKLDAFLQPLSKPLSSQPQAIVTEDKTDIS
Sbjct: 361 KSTTSLTSSSTSGSSDKVYAHQMVRTDSREQKLDAFLQPLSKPLSSQPQAIVTEDKTDIS 420
Query: 421 SGRARQQDEEMLELPAPAEVAAKNQSLEGDTTKGTSEMSEKRGPTSSNPRKRHRXXXXXX 480
SGRARQQDEEMLELPAPAEVAAKNQSLEGDTTKGTSEMSEKRGPTSSNPRKRHR
Sbjct: 421 SGRARQQDEEMLELPAPAEVAAKNQSLEGDTTKGTSEMSEKRGPTSSNPRKRHREDSDVE 480
Query: 481 XXXXXXRKEMTAACTPRRRIINLTSVLSLQEEINEQGHEVLREMLHNHSFVGCVNPQWAL 540
RKEMTAACTPRRRIINLTSVLSLQEEINEQGHEVLREMLHNHSFVGCVNPQWAL
Sbjct: 481 MVEDDSRKEMTAACTPRRRIINLTSVLSLQEEINEQGHEVLREMLHNHSFVGCVNPQWAL 540
Query: 541 AQHQTKLYLLNTTKLSEELFYQILIYDFANFGVLRLSEPAPLFDLAMLALDSPESGWTEE 600
AQHQTKLYLLNTTKLSEELFYQILIYDFANFGVLRLSEPAPLFDLAMLALDSPESGWTEE
Sbjct: 541 AQHQTKLYLLNTTKLSEELFYQILIYDFANFGVLRLSEPAPLFDLAMLALDSPESGWTEE 600
Query: 601 DGPKEGLAEYIVEFLKKKAEMLADYFSLEIDEEGNLIGLPLLIDNYVPPLEGLPIFILRL 660
DGPKEGLAEYIVEFLKKKAEMLADYFSLEIDEEGNLIGLPLLIDNYVPPLEGLPIFILRL
Sbjct: 601 DGPKEGLAEYIVEFLKKKAEMLADYFSLEIDEEGNLIGLPLLIDNYVPPLEGLPIFILRL 660
Query: 661 ATEVNWDEEKECFESLSKECAMFYSIRKQYISEESTLSGQQSEVPGSIPNSWKWTVEHIV 720
ATEVNWDEEKECFESLSKECAMFYSIRKQYISEESTLSGQQSEVPGSIPNSWKWTVEHIV
Sbjct: 661 ATEVNWDEEKECFESLSKECAMFYSIRKQYISEESTLSGQQSEVPGSIPNSWKWTVEHIV 720
Query: 721 YKALRSHILPPKHFTEDGNILQLANLPDLYKVFERC 756
YKALRSHILPPKHFTEDGNILQLANLPDLYKVFERC
Sbjct: 721 YKALRSHILPPKHFTEDGNILQLANLPDLYKVFERC 756
>gi|825572|sp|P38920|MLH1_YEAST MUTL PROTEIN HOMOLOG 1 (DNA MISMATCH
REPAIR PROTEIN MLH1).
Length = 769
Score = 437 bits (1254), Expect = e-122
Identities = 289/781 (37%), Positives = 444/781 (56%), Gaps = 48/781 (6%)
Query: 8 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTG 67
I+ LD +VVN+IAAGE+I P NA+KEM+EN +DA +T I ++VKEGG+K++QI DNG+G
Sbjct: 5 IKALDASVVNKIAAGEIIISPVNALKEMMENSIDANATMIDILVKEGGIKVLQITDNGSG 64
Query: 68 IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 127
I K DL I+CERFTTSKLQ FEDL+ I TYGFRGEALASISHVA VT+TTK + +CA+R
Sbjct: 65 INKADLPILCERFTTSKLQKFEDLSQIQTYGFRGEALASISHVARVTVTTKVKEDRCAWR 124
Query: 128 ASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVHN 187
SY++GK+ PKP AG GT I VEDLF+NI +R +AL++ ++EY KIL+VVGRY++H+
Sbjct: 125 VSYAEGKMLESPKPVAGKDGTTILVEDLFFNIPSRLRALRSHNDEYSKILDVVGRYAIHS 184
Query: 188 AGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEI---GCEDKTLAFKMNG 244
I FS KK G++ + P+ + D IR++F +V+ LI ED L ++G
Sbjct: 185 KDIGFSCKKFGDSNYSLSVKPSYTVQDRIRTVFNKSVASNLITFHISKVEDLNLE-SVDG 243
Query: 245 YISNANYSVKKCIF-LLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNV 303
+ N N+ KK I + FIN+RLV LR+A+ +VY+ YLPK PF+YL + I P V
Sbjct: 244 KVCNLNFISKKSISPIFFINNRLVTCDLLRRALNSVYSNYLPKGNRPFIYLGIVIDPAAV 303
Query: 304 DVNVHPTKHEVHFLHEESILERVQQHIESKLLGSNSSRMYFTQTL---LPGLAGPSGEMV 360
DVNVHPTK EV FL ++ I+E++ + ++L ++SR + ++ P P + +
Sbjct: 304 DVNVHPTKREVRFLSQDEIIEKIANQLHAELSAIDTSRTFKASSISTNKPESLIPFNDTI 363
Query: 361 KXXXXXXXXXXXXXXDKVY--AHQMVRTDSREQ----KLDAFLQPLSKPLSSQPQAIVTE 414
+ + Y A+ +R R++ ++DA ++ LSS Q
Sbjct: 364 ESDRNRKSLRQAQVVENSYTTANSQLRKAKRQENKLVRIDASQAKITSFLSSSQQFNFE- 422
Query: 415 DKTDISSGRARQQDEEMLELPAPAEVAAKNQSLEGDTTKGTSEMSEKRGPTSSNPRKRHR 474
S RQ E + + ++ A K E + + + +++ P+K+ +
Sbjct: 423 -----GSSTKRQLSEPKVTNVSHSQEAEKLTLNESEQPRDANTIND--NDLKDQPKKKQK 475
Query: 475 XXXXXXXXXXXXRKEMTAAC------TPRRRI-INLTSVLSLQEEINEQGHEVLREMLHN 527
K P+ R+ +NLTS+ L+E++++ H L ++ N
Sbjct: 476 LGDYKVPSIADDEKNALPISKDGYIRVPKERVNVNLTSIKKLREKVDDSIHRELTDIFAN 535
Query: 528 HSFVGCVNPQWALA--QHQTKLYLLNTTKLSEELFYQILIYDFANFGVLRLSEPAPLFDL 585
++VG V+ + LA QH KL+L++ + ELFYQI + DFANFG + L D+
Sbjct: 536 LNYVGVVDEERRLAAIQHDLKLFLIDYGSVCYELFYQIGLTDFANFGKINLQSTNVSDDI 595
Query: 586 AMLALDSPESGWTEEDGPKEGLAEYIVEFLKKKAEMLADYFSLEIDEEG--------NLI 637
+ L S E +D KE + I + + ML +Y+S+E+ +G L
Sbjct: 596 VLYNLLS-EFDELNDDASKEKIISKIWDM----SSMLNEYYSIELVNDGLDNDLKSVKLK 650
Query: 638 GLPLLIDNYVPPLEGLPIFILRLATEVNWDEEKECFESLSKECAMFY--SIRKQYISEES 695
LPLL+ Y+P L LP FI RL EV+W++E+EC + + +E A+ Y + + + ++
Sbjct: 651 SLPLLLKGYIPSLVKLPFFIYRLGKEVDWEDEQECLDGILREIALLYIPDMVPKVDTSDA 710
Query: 696 TLSGQQSEVPGSIPNSWKWTVEHIVYKALRSHILPPKHFTEDGNILQLANLPDLYKVFER 755
+LS + + +EH+++ ++ L P+H +D ++++ANLPDLYKVFER
Sbjct: 711 SLSEDEKAQFINRKEHISSLLEHVLFPCIKRRFLAPRHILKD--VVEIANLPDLYKVFER 768
Query: 756 C 756
C
Sbjct: 769 C 769
>gi|1573016|sp|P44494|MUTL_HAEIN DNA MISMATCH REPAIR PROTEIN MUTL.
Length = 629
Score = 190 bits (538), Expect = 4e-48
Identities = 115/319 (36%), Positives = 191/319 (59%), Gaps = 7/319 (2%)
Query: 8 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTG 67
I+ L + N+IAAGEV++RPA+ +KE++EN LDA + IQ+ ++ GG LI+I+DNG G
Sbjct: 3 IKILSPQLANQIAAGEVVERPASVVKELVENSLDAGANKIQIDIENGGANLIRIRDNGCG 62
Query: 68 IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 127
I KE+L + R TSK+ +DL +I + GFRGEALASIS V+ +T+T++T + A++
Sbjct: 63 IPKEELSLALARHATSKIADLDDLEAILSLGFRGEALASISSVSRLTLTSRTEEQTEAWQ 122
Query: 128 ASYSDGK-LKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVH 186
Y+ G+ ++ KP + GT + V +LF+N RRK L+ E+ I EV+ R ++
Sbjct: 123 V-YAQGRDMETTIKPASHPVGTTVEVANLFFNTPARRKFLRTDKTEFSHIDEVIRRIALT 181
Query: 187 NAGISFSVKKQGETVADVRTLPNAS-TVDNIRSIFGNAVSRELIEIGCEDKTLAFKMNGY 245
+F++ G+ + R + + + +I G+ + + I E K ++G+
Sbjct: 182 KFNTAFTLTHNGKIIRQYRPAEAINQQLKRVAAICGDDFVKNALRI--EWKHDDLHLSGW 239
Query: 246 ISNANYS-VKKCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVD 304
++ N+S + + +IN R+V + AI YA YLP + +P L ++++P +VD
Sbjct: 240 VATPNFSRTQNDLSYCYINGRMVRDKVISHAIRQAYAQYLPTDAYPAFVLFIDLNPHDVD 299
Query: 305 VNVHPTKHEVHFLHEESIL 323
VNVHPTKHEV F H++ ++
Sbjct: 300 VNVHPTKHEVRF-HQQRLI 317
>gi|304915|sp|P23367|MUTL_ECOLI DNA MISMATCH REPAIR PROTEIN MUTL.
Length = 615
Score = 190 bits (537), Expect = 5e-48
Identities = 122/339 (35%), Positives = 197/339 (57%), Gaps = 15/339 (4%)
Query: 8 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTG 67
I+ L + N+IAAGEV++RPA+ +KE++EN LDA +T I + ++ GG KLI+I+DNG G
Sbjct: 3 IQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCG 62
Query: 68 IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 127
I+K++L + R TSK+ S +DL +I + GFRGEALASIS V+ +T+T++TA+ + A++
Sbjct: 63 IKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEAWQ 122
Query: 128 ASYSDGK-LKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVH 186
A Y++G+ + KP A GT + V DLFYN RRK L+ E+ I E++ R ++
Sbjct: 123 A-YAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIALA 181
Query: 187 NAGISFSVKKQGETVADVRTLPNASTVD-NIRSIFGNAVSRELIEIGCEDKTLAFKMNGY 245
++ ++ G+ V R +P + + +I G A + + I + L + G+
Sbjct: 182 RFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLT--LRGW 239
Query: 246 ISNANYSVKKC--IFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNV 303
+++ N++ I ++N R++ + AI L + P L LEI P V
Sbjct: 240 VADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQV 299
Query: 304 DVNVHPTKHEVHF-----LHE---ESILERVQQHIESKL 334
DVNVHP KHEV F +H+ + +L +QQ +E+ L
Sbjct: 300 DVNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPL 338
>gi|154186|sp|P14161|MUTL_SALTY DNA MISMATCH REPAIR PROTEIN MUTL.
Length = 618
Score = 183 bits (516), Expect = 8e-46
Identities = 119/339 (35%), Positives = 193/339 (56%), Gaps = 15/339 (4%)
Query: 8 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTG 67
I+ L + N+IAAGEV++RPA+ +KE++EN LDA +T + + ++ GG KLI+I+DNG G
Sbjct: 3 IQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRVDIDIERGGAKLIRIRDNGCG 62
Query: 68 IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 127
I+KE+L + R TSK+ S +DL +I + GFRGEALASIS V+ +T+T++TA+ A++
Sbjct: 63 IKKEELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQAEAWQ 122
Query: 128 ASYSDGK-LKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVH 186
A Y++G+ + KP A GT + V DLFYN RRK ++ E+ I E++ R ++
Sbjct: 123 A-YAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFNHIDEIIRRIALA 181
Query: 187 NAGISFSVKKQGETVADVRTLPNASTVD-NIRSIFGNAVSRELIEIGCEDKTLAFKMNGY 245
++ ++ G+ V R + + + +I G + + I + L + G+
Sbjct: 182 RFDVTLNLSHNGKLVRQYRAVAKDGQKERRLGAICGTPFLEQALAIEWQHGDLT--LRGW 239
Query: 246 ISNANYSVKKC--IFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNV 303
+++ N++ I ++N R++ + AI L + P L LEI P V
Sbjct: 240 VADPNHTTTALTEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQV 299
Query: 304 DVNVHPTKHEVHF-----LHE---ESILERVQQHIESKL 334
DVNVHP KHEV F +H+ + +L +QQ E+ L
Sbjct: 300 DVNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQTETAL 338
>gi|1002521|sp|P49850|MUTL_BACSU DNA MISMATCH REPAIR PROTEIN MUTL.
Length = 627
Score = 172 bits (486), Expect = 1e-42
Identities = 110/329 (33%), Positives = 186/329 (56%), Gaps = 8/329 (2%)
Query: 4 VAGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQD 63
+A VI+ DE + N+IAAGEV++RPA+ +KE++EN +DA ST I++ ++E GL I++ D
Sbjct: 1 MAKVIQLSDE-LSNKIAAGEVVERPASVVKELVENAIDADSTVIEIDIEEAGLASIRVLD 59
Query: 64 NGTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGK 123
NG G+ ED R TSK++ DL + T GFRGEAL SI+ V+H+ ITT T +G
Sbjct: 60 NGEGMENEDCKRAFRRHATSKIKDENDLFRVRTLGFRGEALPSIASVSHLEITTSTGEG- 118
Query: 124 CAYRASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRY 183
+ G + + + + +GT+I V +LF+N R K +K E G I +VV R
Sbjct: 119 AGTKLVLQGGNIISESR-SSSRKGTEIVVSNLFFNTPARLKYMKTVHTELGNITDVVNRI 177
Query: 184 SVHNAGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGCEDKTLAFKMN 243
++ + +S ++ G+ + ++T N + +I+G AV+++++ + +L F++
Sbjct: 178 ALAHPEVSIRLRHHGKNL--LQTNGNGDVRHVLAAIYGTAVAKKMLPL--HVSSLDFEVK 233
Query: 244 GYISNANYS-VKKCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQN 302
GYI+ + + +N R +++ L KA+ Y LP HP ++ + + P
Sbjct: 234 GYIALPEITRASRNYMSSVVNGRYIKNFPLVKAVHEGYHTLLPIGRHPITFIEITMDPIL 293
Query: 303 VDVNVHPTKHEVHFLHEESILERVQQHIE 331
VDVNVHP+K EV E + + ++ I+
Sbjct: 294 VDVNVHPSKLEVRLSKETELHDLIRDGIK 322
>gi|153657|sp|P14160|HEXB_STRPN DNA MISMATCH REPAIR PROTEIN HEXB.
Length = 649
Score = 172 bits (485), Expect = 1e-42
Identities = 116/328 (35%), Positives = 180/328 (54%), Gaps = 6/328 (1%)
Query: 8 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTG 67
I L E + N+IAAGEVI+RPA+ KE++EN +DA S+ I + ++E GLK +QI DNG G
Sbjct: 4 IIELPEMLANQIAAGEVIERPASVCKELVENAIDAGSSQIIIEIEEAGLKKVQITDNGHG 63
Query: 68 IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 127
I +++++ R TSK+++ DL I T GFRGEAL SI+ V+ +T+ T DG
Sbjct: 64 IAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLT-AVDGASHGT 122
Query: 128 ASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVHN 187
+ G P GT++ VEDLF+N R K +K+ E I+++V R + +
Sbjct: 123 KLVARGGEVEEVIPATSPVGTKVCVEDLFFNTPARLKYMKSQQAELSHIIDIVNRLGLAH 182
Query: 188 AGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGCEDKTLAFKMNGYIS 247
ISFS+ G+ + RT I I+G ++++IEI E+ L F+++G++S
Sbjct: 183 PEISFSLISDGKEM--TRTAGTGQLRQAIAGIYGLVSAKKMIEI--ENSDLDFEISGFVS 238
Query: 248 NANYS-VKKCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDVN 306
+ + LFIN R +++ L +AI + + L P + + I P DVN
Sbjct: 239 LPELTRANRNYISLFINGRYIKNFLLNRAILDGFGSKLMVGRFPLAVIHIHIDPYLADVN 298
Query: 307 VHPTKHEVHFLHEESILERVQQHIESKL 334
VHPTK EV E+ ++ V + I + L
Sbjct: 299 VHPTKQEVRISKEKELMTLVSEAIANSL 326
>gi|557470|sp|P54278|PMS2_HUMAN PMS1 PROTEIN HOMOLOG 2 (DNA MISMATCH
REPAIR PROTEIN PMS2).
Length = 862
Score = 154 bits (434), Expect = 3e-37
Identities = 119/384 (30%), Positives = 205/384 (52%), Gaps = 36/384 (9%)
Query: 5 AGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDN 64
A I+ +D V++I +G+V+ + A+KE++EN LDA +T+I + +K+ G+ LI++ DN
Sbjct: 12 AKAIKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDN 71
Query: 65 GTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKC 124
G G+ +E+ + + + TSK+Q F DL + T+GFRGEAL+S+ ++ VTI+T A K
Sbjct: 72 GCGVEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHASAKV 131
Query: 125 AYRASYS-DGKL--KAP-PKPCAGNQGTQITVEDLFYNIATRRKAL-KNPSEEYGKILEV 179
R + +GK+ K P P+P +GT ++V+ LF + R K +N +EY K+++V
Sbjct: 132 GTRLMFDHNGKIIQKTPYPRP----RGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQV 187
Query: 180 VGRYSVHNAGISFSVKK---QGETVADVRTLPNASTVDNIRSIFGNAVSRELI------- 229
+ Y + +AGI S QG+ V T + S +NI S+FG + LI
Sbjct: 188 LHAYCIISAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQLQSLIPFVQLPP 247
Query: 230 -EIGCEDKTLA--------FKMNGYISNANYSVKKCIF---LLFINHRLVESTSLRKAIE 277
+ CE+ L+ F ++G+IS + V + FIN R + + + +
Sbjct: 248 SDSVCEEYGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFFINRRPCDPAKVCRLVN 307
Query: 278 TVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEESILERVQQHIESKLLGS 337
VY Y ++ +PF+ L++ + + VD+NV P K ++ L EE +L V +++ L+G
Sbjct: 308 EVYHMY-NRHQYPFVVLNISVDSECVDINVTPDKRQI-LLQEEKLLLAV---LKTSLIGM 362
Query: 338 NSSRMYFTQTLLPGLAGPSGEMVK 361
S + L G ++K
Sbjct: 363 FDSDVNKLNVSQQPLLDVEGNLIK 386
>sp|P54280|PMS1_SCHPO DNA MISMATCH REPAIR PROTEIN PMS1.
Length = 794
Score = 151 bits (424), Expect = 3e-36
Identities = 137/520 (26%), Positives = 242/520 (46%), Gaps = 33/520 (6%)
Query: 8 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTG 67
++ +D V++I +G+VI A+A+KE++EN LD+ +T+I++ K G+ I++ DNG+G
Sbjct: 4 VKPIDANTVHKICSGQVITDVASAVKELVENSLDSGATTIEIRFKNYGINSIEVVDNGSG 63
Query: 68 IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTAD--GKCA 125
I D + + ++ TSK+ FEDL ++ T+GFRGEAL+S+ V V I+T T + K
Sbjct: 64 IDAGDYESIGKKHFTSKITDFEDLEALQTFGFRGEALSSLCAVGQVIISTATQNEAPKGV 123
Query: 126 YRASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKAL-KNPSEEYGKILEVVGRYS 184
+G LK +GT + V DLF + RRK L KN E+ K + ++ Y+
Sbjct: 124 QLNLDHEGSLK-DKLTIPFQRGTSVMVNDLFCTLPVRRKLLEKNYKREFSKAISLLQAYA 182
Query: 185 VHNAGISFSVKKQGETVADVRTLPNASTVD---NIRSIFGNAVSRELIEIGCEDKTLAFK 241
+ F V Q + + L S D NI ++FG VS LI D +
Sbjct: 183 TISTNKRFMVYHQTKNSGKLLQLSTNSNKDMKLNIMNVFGTKVSSSLIP--WNDGII--- 237
Query: 242 MNGYISNANYSVKKCI---FLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEI 298
GYIS + + +LFIN RLV + + I+ V+ Y + PF ++L I
Sbjct: 238 -EGYISRPHVGSTRASNERQMLFINRRLVNLPKIARVIQEVFKPYSMAQS-PFFAINLRI 295
Query: 299 SPQNVDVNVHPTKHEVHFLHEESILERVQQHIES--KLLG-----SNSSRMYFTQTLLPG 351
+ +D+NV P K V E+SI+E ++ +++ + G S S ++ + +P
Sbjct: 296 TNGTIDINVSPDKKSVFLSEEDSIIEFIKNSLQNLCESCGHAISCSRSQSIFSYSSQIPD 355
Query: 352 LAGPSGEMVKXXXXXXXXXXXXXXDKVYAHQMVRTDSREQKLDAFLQPLSKPLSSQPQAI 411
+G S + + D ++++ R+ + + ++A QP ++ ++
Sbjct: 356 SSGDSTDQ-ELPQSIPATESETSDDSSFSYK--RSPCKRKLVEATAQPAISTSVAEGASL 412
Query: 412 VTEDKTDISSGRARQQDEEMLELPAPAEVAAKNQSLEGDTT--KGTSEMSEKRGPTSSNP 469
K Q+D P +V A ++ ++ +++ S ++ SS P
Sbjct: 413 AQVSK---PLPERLQKDSMRRSSPLNEKVTASSERMKKKLALFASSTDTSMQKTIDSSFP 469
Query: 470 RKRHRXXXXXXXXXXXXRKEMTAACTPRRRIINLTSVLSL 509
K+ + + A TP + INL + S+
Sbjct: 470 LKQ-PINKPSSNPNNLLLNDPSPASTPVAKTINLNEIESV 508
>gi|896063|sp|P54279|PMS2_MOUSE PMS1 PROTEIN HOMOLOG 2 (DNA MISMATCH
REPAIR PROTEIN PMS2).
Length = 859
Score = 137 bits (385), Expect = 3e-32
Identities = 119/388 (30%), Positives = 209/388 (53%), Gaps = 44/388 (11%)
Query: 5 AGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDN 64
A I+ +D V++I +G+VI + A+KE+IEN +DA +T+I + +K+ G+ LI++ DN
Sbjct: 12 AKAIKPIDGKSVHQICSGQVILSLSTAVKELIENSVDAGATTIDLRLKDYGVDLIEVSDN 71
Query: 65 GTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKC 124
G G+ +E+ + + + TSK+Q F DL + T+GFRGEAL+S+ ++ VTI+T
Sbjct: 72 GCGVEEENFEGLALKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHGSASV 131
Query: 125 AYRASYS-DGKL--KAP-PKPCAGNQGTQITVEDLFYNIATRRKAL-KNPSEEYGKILEV 179
R + +GK+ K P P+P +GT ++V+ LFY + R K +N +EY K+++V
Sbjct: 132 GTRLVFDHNGKITQKTPYPRP----KGTTVSVQHLFYTLPVRYKEFQRNIKKEYSKMVQV 187
Query: 180 VGRYSVHNAGISFSVKK---QGETVADVRTLPNASTVDNIRSIFGNAVSRELI------- 229
+ Y + +AG+ S QG+ A V T + +NI S+FG + LI
Sbjct: 188 LQAYCIISAGVRVSCTNQLGQGKRHAVVCTSGTSGMKENIGSVFGQKQLQSLIPFVQLPP 247
Query: 230 -EIGCED---------KTLA-FKMNGYIS-NANYSVKKC-IFLLFINHRLVESTSLRKAI 276
+ CE+ KT + F+ + + + A V++ F I + + SL ++
Sbjct: 248 SDAVCEEYGLSTSGRHKTFSTFRASFHSARTAPGGVQQTGSFSSSIRGPVTQQRSLSLSM 307
Query: 277 ETVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEESILERVQQHIESKLLG 336
Y Y ++ +PF+ L++ + + VD+NV P K ++ L EE +L V +++ L+G
Sbjct: 308 R-FYHMY-NRHQYPFVVLNVSVDSECVDINVTPDKRQI-LLQEEKLLLAV---LKTSLIG 361
Query: 337 ---SNSSRMYFTQTLLPGLAGPSGEMVK 361
S+++++ Q P L G +VK
Sbjct: 362 MFDSDANKLNVNQQ--P-LLDVEGNLVK 386
>gi|887629|sp|P14242|PMS1_YEAST DNA MISMATCH REPAIR PROTEIN PMS1.
Length = 904
Score = 135 bits (378), Expect = 2e-31
Identities = 107/343 (31%), Positives = 179/343 (51%), Gaps = 35/343 (10%)
Query: 8 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTG 67
I ++++ V+RI +G+VI A+KE+++N +DA + I++I K+ GL+ I+ DNG G
Sbjct: 35 IHQINDIDVHRITSGQVITDLTTAVKELVDNSIDANANQIEIIFKDYGLESIECSDNGDG 94
Query: 68 IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 127
I + + + + TSK+ F+D+A + T GFRGEAL+S+ +A +++ T T+ K A +
Sbjct: 95 IDPSNYEFLALKHYTSKIAKFQDVAKVQTLGFRGEALSSLCGIAKLSVITTTSPPK-ADK 153
Query: 128 ASYS-DGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKAL-KNPSEEYGKILEVVGRYSV 185
Y G + + + N+GT + V LF+N+ R+K K ++ K L V+ Y++
Sbjct: 154 LEYDMVGHITS-KTTTSRNKGTTVLVSQLFHNLPVRQKEFSKTFKRQFTKCLTVIQGYAI 212
Query: 186 HNAGISFSV---KKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGC-------ED 235
NA I FSV +G+ + T+ N+S NI S+FG R L E+ ++
Sbjct: 213 INAAIKFSVWNITPKGKKNLILSTMRNSSMRKNISSVFGAGGMRGLEEVDLVLDLNPFKN 272
Query: 236 KTLA--------------FKMNGYISNANYSV---KKCIFLLFINHRLVESTSLRKAIET 278
+ L ++ GYIS ++ K +++N R VE ++L K
Sbjct: 273 RMLGKYTDDPDFLDLDYKIRVKGYISQNSFGCGRNSKDRQFIYVNKRPVEYSTLLKCCNE 332
Query: 279 VYAAYLPKNTH-PFLYLSLEISPQNVDVNVHPTKHEVHFLHEE 320
VY + N P ++L+LE+ +DVNV P K V LH E
Sbjct: 333 VYKTF--NNVQFPAVFLNLELPMSLIDVNVTPDK-RVILLHNE 372
>gi|535513|sp|P54277|PMS1_HUMAN PMS1 PROTEIN HOMOLOG 1 (DNA MISMATCH
REPAIR PROTEIN PMS1).
Length = 932
Score = 120 bits (335), Expect = 5e-27
Identities = 94/329 (28%), Positives = 167/329 (50%), Gaps = 16/329 (4%)
Query: 8 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTG 67
+++L V +++ ++I + +KE+IEN LDA +TS+ V ++ G I+++DNG G
Sbjct: 1 MKQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEG 60
Query: 68 IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKT-ADGKCAY 126
I+ D ++ ++ TSK+ S EDL +++TYGFRGEAL SI +A V ITT+T AD
Sbjct: 61 IKAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTRTAADNFSTQ 120
Query: 127 RASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRK---ALKNPSEEYGKILEVVGRY 183
G + + KP QGT +T LF N+ R++ K +E KI +++ +
Sbjct: 121 YVLDGSGHILS-QKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKIQDLLMSF 179
Query: 184 SVHNAGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGCEDKTLAFKMN 243
+ + V + V ++ + + + S+ G AV + + ++
Sbjct: 180 GILKPDLRI-VFVHNKAVIWQKSRVSDHKM-ALMSVLGTAVMNNMESFQYHSEESQIYLS 237
Query: 244 GYI--SNANYSVKKCI----FLLFINHRLVESTSLRKAIETVY-AAYLPKNT--HPFLYL 294
G++ +A++S +FIN R V + K I Y L ++T +P +L
Sbjct: 238 GFLPKCDADHSFTSLSTPERSFIFINSRPVHQKDILKLIRHHYNLKCLKESTRLYPVFFL 297
Query: 295 SLEISPQNVDVNVHPTKHEVHFLHEESIL 323
+++ +VDVN+ P K +V ++ES+L
Sbjct: 298 KIDVPTADVDVNLTPDKSQVLLQNKESVL 326
>gi|304123|sp|Q07737|CHVG_AGRTU SENSOR PROTEIN CHVG (EC 2.7.3.-).
Length = 690
Score = 34.2 bits (84), Expect = 0.54
Identities = 38/122 (31%), Positives = 55/122 (44%), Gaps = 13/122 (10%)
Query: 27 RPANAIKEMIENCLDAKST-SIQVIVKEGGLK---LIQIQDNGTGIRKEDLDIVCERFTT 82
R + +IEN S S ++ V+ K ++Q++DNG GI+ ED+D + ERF T
Sbjct: 463 RIGQIVTNLIENARSFVSEESGRITVRLSRHKDRCIVQVEDNGPGIQAEDIDRIFERFYT 522
Query: 83 SKLQSFEDLASISTYGF---RGEALASISHVAHVTITTKTADGKCAYRASYSDGKLKAPP 139
+ S E S G R A A T +T TA Y+A S + + P
Sbjct: 523 DRPAS-EGFGQNSGLGLSISRQIAEAHGGSSGRKTWSTNTA----LYQARASPCRCRR-P 576
Query: 140 KP 141
KP
Sbjct: 577 KP 578
>gi|410142|sp|P35164|RESE_BACSU SENSOR PROTEIN RESE (EC 2.7.3.-).
Length = 589
Score = 33.1 bits (81), Expect = 1.1
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 30 NAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTGIRKEDLDIVCERF 80
N I + + S SI V + GLK I I+D+G+GI +EDL + ERF
Sbjct: 488 NLIDNALRHTSAGGSVSISVHSVKDGLK-IDIKDSGSGIPEEDLPFIFERF 537
>gi|22652|sp|P36183|ENPL_HORVU ENDOPLASMIN HOMOLOG PRECURSOR (GRP94
HOMOLOG).
Length = 809
Score = 32.1 bits (78), Expect = 2.2
Identities = 48/184 (26%), Positives = 81/184 (43%), Gaps = 24/184 (13%)
Query: 11 LDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQV-IVKEGGLKLIQIQDNGTGIR 69
L E + N A + I+ A KE++ D IQ+ + KE K++ I+D G G+
Sbjct: 105 LRELISNASDALDKIRFLALTDKEVMGEG-DTAKLEIQIKLDKEN--KILSIRDRGVGMT 161
Query: 70 KED----LDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVA-HVTITTKTADGKC 124
KED L + + T++ ++ + ++ G G S+ VA +V + +K D K
Sbjct: 162 KEDLIKNLGTIAKSGTSAFVEKMQTGGDLNLIGQFGVGFYSVYLVADYVEVVSKHNDDKQ 221
Query: 125 AYRASYSDGKLKAPP----KPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVV 180
S +DG +P +GT+I + R K EE GK+ ++V
Sbjct: 222 YVWESKADGSFAISEDTWNEPL--GRGTEIKLH--------LRDEAKEYLEE-GKLKDLV 270
Query: 181 GRYS 184
+YS
Sbjct: 271 KKYS 274
>gi|1079689|sp|P54070|KTR6_YEAST PROBABLE MANNOSYLTRANSFERASE KTR6
(EC 2.4.1.131).
Length = 446
Score = 31.8 bits (77), Expect = 2.9
Identities = 24/108 (22%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
Query: 188 AGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGCEDKTLAFKMNGYIS 247
A IS +++ ++ + L + + IR+ NA+ ++ G + TL F + YI+
Sbjct: 52 AKISAEEQRRIQSEQEEAELKQSLEGEAIRNATVNAIKEKIKSYGGNETTLGFMVPSYIN 111
Query: 248 NANYSVKKCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLS 295
+ K C F+ I R T + ++I+ V + +P++++S
Sbjct: 112 HRGSPPKAC-FVSLITER-DSMTQILQSIDEVQVKFNKNFAYPWVFIS 157
>gi|159354|sp|P27741|HS83_LEIAM HEAT SHOCK PROTEIN 83 (HSP 83).
Length = 701
Score = 31.8 bits (77), Expect = 2.9
Identities = 44/152 (28%), Positives = 68/152 (43%), Gaps = 14/152 (9%)
Query: 41 DAKSTSIQVIV-KEGGLKLIQIQDNGTGIRKED----LDIVCERFTTSKLQSFEDLASIS 95
DA ++V+ KE K + ++DNG G+ K D L + T + +++ E A +S
Sbjct: 57 DATRLCVRVVPDKEN--KTLTVEDNGIGMTKADLVNNLGTIARSGTKAFMEALEAGADMS 114
Query: 96 TYGFRGEALASISHVA-HVTITTKTADGKCAYRASYSDGKLKAPPKPCAGNQ-GTQITV- 152
G G S VA VT+T+K + S + G P + + +IT+
Sbjct: 115 MIGQFGVGFYSAYLVADRVTVTSKNNSDEVYVWESSAGGTFTITSAPESDMKLPARITLH 174
Query: 153 --ED-LFYNIATRRKAL-KNPSEEYGKILEVV 180
ED L Y A R K L K SE G +E++
Sbjct: 175 LKEDQLEYLEARRLKELIKKHSEFIGYDIELM 206
>sp|P56116|HTPG_HELPY HEAT SHOCK PROTEIN HTPG (HIGH TEMPERATURE
PROTEIN G).
Length = 621
Score = 31.4 bits (76), Expect = 3.6
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 13/106 (12%)
Query: 57 KLIQIQDNGTGIRKED----LDIVCERFTTSKLQSF-----EDLASISTYGFRGEALASI 107
K + I+DNG G+ K D L + + T + L + +D A I +G G ++
Sbjct: 73 KTLTIKDNGIGMDKNDLIEHLGTIAKSGTKNFLSALSGDKKKDSALIGQFGV-G-FYSAF 130
Query: 108 SHVAHVTITTKTADGKCAYRASYSDGKLKAPPKPCA-GNQGTQITV 152
+ + + TK + AY A SDGK K C QGT+IT+
Sbjct: 131 MVASKIVVQTKKVNSDQAY-AWVSDGKGKFEISECVKDEQGTEITL 175
>gi|48722|sp|P18636|MBHL_RHILV UPTAKE HYDROGENASE LARGE SUBUNIT (EC
1.18.99.1) (HYDROGENLYASE) (MEMBRANE-BOUND HYDROGENASE
LARGE SUBUNIT).
Length = 596
Score = 31.1 bits (75), Expect = 4.6
Identities = 22/65 (33%), Positives = 32/65 (48%), Gaps = 2/65 (3%)
Query: 240 FKMNGYISNANYSVKKCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEIS 299
FK NGY NA+Y + L+ + H L E+ +K I ++ + KN HP +
Sbjct: 181 FK-NGYWGNASYKLPPEANLMAVAHYL-EALDFQKEIVKIHTIFGGKNPHPNWLVGGVPC 238
Query: 300 PQNVD 304
P NVD
Sbjct: 239 PINVD 243
>gi|1800079|sp|P06980|GSH1_ECOLI GLUTAMATE--CYSTEINE LIGASE (EC
6.3.2.2) (GAMMA-GLUTAMYLCYSTEINE SYNTHETASE) (GAMMA-ECS)
(GCS).
Length = 518
Score = 31.1 bits (75), Expect = 4.6
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 150 ITVEDLFYNIATRRKALKNPSEEYGKI-LEVVGRYSVHNAGISFSVKKQGETVADVR 205
IT DL+ +A ++A+K PSEEY KI +E G+ N+ + ++ + E A +R
Sbjct: 251 ITFNDLYEYVAGLKQAIKTPSEEYAKIGIEKDGKRLQINSNV---LQIENELYAPIR 304
>gi|48774|sp|P25280|YD3M_HERAU HYPOTHETICAL 68.4 KD PROTEIN IN
HGIDIIM 3'REGION (ORF68).
Length = 611
Score = 30.7 bits (74), Expect = 5.8
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 34 EMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTGIRKEDLDIVCERFTTSKLQ-SFEDLA 92
+++ N DA +T + + +++ I IQDNG G+ ED + R K + S ++
Sbjct: 32 KLVANAWDADATEVSINIRQDE---IVIQDNGIGMSIEDANTKFLRIGHQKREDSANTIS 88
Query: 93 SISTYGFRGEALASISHVAHVTITTKTADG 122
G +G + +I +A++ DG
Sbjct: 89 GRHVMGRKGIGILAIFGIANIAEVYSCKDG 118
>gi|407324|sp|P51825|AF4_HUMAN AF-4 PROTEIN (FEL PROTEIN).
Length = 1210
Score = 30.7 bits (74), Expect = 5.8
Identities = 24/83 (28%), Positives = 38/83 (44%), Gaps = 7/83 (8%)
Query: 398 QPLSKPLSSQPQAIVTEDKTDIS-----SGRARQQDEEMLELPAPA-EVAAKNQ-SLEGD 450
+P++ SS ++ T D S S + ++ E LE PAP E N+ L+
Sbjct: 459 EPVASAHSSSAESESTSDSDSSSDSESESSSSDSEENEPLETPAPEPEPPTTNKWQLDNW 518
Query: 451 TTKGTSEMSEKRGPTSSNPRKRH 473
TK + + GP S+ P +RH
Sbjct: 519 LTKVSQPAAPPEGPRSTEPPRRH 541
>gi|6960|sp|P30630|LIN9_CAEEL LIN-9 PROTEIN.
Length = 610
Score = 30.4 bits (73), Expect = 7.4
Identities = 20/69 (28%), Positives = 36/69 (51%), Gaps = 5/69 (7%)
Query: 680 CAMFYS-IRKQYISEESTLSGQQSEVPGSIPNSWKWTVEHIVYKALRSHILPPKHFTEDG 738
C FYS I +Q EE+ + + + S PN W + I ++++R + P+ ++D
Sbjct: 221 CEFFYSAIDEQIFKEENEFA---TIIRESFPNLKNWNLTRIEWRSIRKLLGKPRRCSKDP 277
Query: 739 NILQLANLP 747
+I L +LP
Sbjct: 278 SI-DLKDLP 285
>gi|994798|sp|P46598|HS90_CANAL HEAT SHOCK PROTEIN 90 HOMOLOG.
Length = 707
Score = 30.0 bits (72), Expect = 9.4
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 50 IVKEGGLKLIQIQDNGTGIRKED----LDIVCERFTTSKLQSFEDLASISTYGFRGEALA 105
I+ + K+++I+D+G G+ K D L + + T S +++ A +S G G
Sbjct: 69 IIPQKDQKVLEIRDSGIGMTKADLVNNLGTIAKSGTKSFMEALSAGADVSMIGQFGVGFY 128
Query: 106 SISHVA-HVTITTKTADGKCAYRASYSDGK 134
S+ VA HV + +K D + S + GK
Sbjct: 129 SLFLVADHVQVISKHNDDEQYVWESNAGGK 158
Database: sp35
Posted date: Sep 21, 2000 12:20 AM
Number of letters in database: 25,083,768
Number of sequences in database: 69,113
Lambda K H
0.316 0.133 0.378
Gapped
Lambda K H
0.239 0.0270 0.100
Matrix: BLOSUM62
Gap Penalties: Existence: 7, Extension: 2
Number of Hits to DB: 35,058,542
Number of Sequences: 69113
Number of extensions: 1445903
Number of successful extensions: 3816
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3770
Number of HSP's gapped (non-prelim): 31
length of query: 756
length of database: 25,083,768
effective HSP length: 125
effective length of query: 631
effective length of database: 16,444,643
effective search space: 10376569733
effective search space used: 10376569733
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 43 (14.8 bits)
X3: 72 (24.8 bits)
S1: 41 (21.6 bits)
S2: 72 (30.0 bits)
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